Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0982
(747 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07) 30 2.3
SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57) 29 4.0
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.0
SB_49381| Best HMM Match : RuvB_C (HMM E-Value=8.2) 29 4.0
SB_47856| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021) 29 5.3
SB_58623| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_49074| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87) 28 7.0
SB_39984| Best HMM Match : RadC (HMM E-Value=2.2) 28 7.0
SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1) 28 7.0
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 28 7.0
SB_24893| Best HMM Match : RuvB_C (HMM E-Value=3.6) 28 7.0
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025) 28 7.0
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6) 28 7.0
SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_54353| Best HMM Match : RuvB_C (HMM E-Value=3.6) 28 7.0
SB_49985| Best HMM Match : RuvB_C (HMM E-Value=3.6) 28 7.0
SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11) 28 7.0
SB_34092| Best HMM Match : RuvB_C (HMM E-Value=3.6) 28 7.0
SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73) 28 7.0
SB_22691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082) 28 7.0
SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33) 28 9.2
SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1) 28 9.2
>SB_40697| Best HMM Match : ABC_tran (HMM E-Value=7.1e-07)
Length = 659
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 142 VKSNPRPETSVSMNLLHD 195
VKSNPR E S+N+LHD
Sbjct: 393 VKSNPRQENDKSVNILHD 410
>SB_31095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 453 PSFCSSFRTSLPRWNVLVNTGSERVDYIDYSRI 551
P+ RTS W V N S ++DYIDY R+
Sbjct: 69 PNLELPLRTS-SHWRVTCNFASTKIDYIDYLRV 100
>SB_47689| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.57)
Length = 295
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 196 NVLDLGQTKQVINSAAAKKCGARLD 220
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 636 NVLDLGQTKQVINSAAAKKCGARLD 660
>SB_49381| Best HMM Match : RuvB_C (HMM E-Value=8.2)
Length = 119
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRVERRFAYW 61
>SB_47856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 557 CFDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
C D ++ID +D G + + V PA R ERRF Y+
Sbjct: 93 CTDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 132
>SB_32343| Best HMM Match : M20_dimer (HMM E-Value=0.0021)
Length = 130
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 264 IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIRFYDIRFSNYRNSSI 106
+H F N+++ ++ D + T Q H A W G+ D Y N S+
Sbjct: 16 VHPFPSNTTMPTVLADKVVMATFKGQTTHAAAFPWEGVNALDAAIMAYSNLSM 68
>SB_58623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1001
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 616 NVLDLGQVKQVINSAAAKKCGARLD 640
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 337 LLDMYRRRAVITSHAAPTCGARLD 408
+LD+ + + VI S AA CGARLD
Sbjct: 326 VLDLGQVKQVINSAAAKKCGARLD 349
>SB_49074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVRKPVVPAALMNRPTRGERRFAYW 61
>SB_42038| Best HMM Match : Phage_integrase (HMM E-Value=0.87)
Length = 417
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144
>SB_39984| Best HMM Match : RadC (HMM E-Value=2.2)
Length = 229
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_34964| Best HMM Match : Phage_integr_N (HMM E-Value=5.1)
Length = 175
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 120 NVLDLGQVKQVINSAAAKKCGARLD 144
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 1121 NVLDLGQVKQVINSAAAKKCGARLD 1145
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 1569 NVLDLGQVKQVINSAAAKKCGARLD 1593
>SB_24893| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 92
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
Length = 731
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 267 NVLDLGQVKQVINSAAAKKCGARLD 291
>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 237
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 118 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 156
>SB_893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 181 NVLDLGQVKQVINSAAAKKCGARLD 205
>SB_54353| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 141
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_49985| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 127
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_46839| Best HMM Match : rve (HMM E-Value=7.3e-11)
Length = 565
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 270 KACSNLFLVIKSSGVYIFMRSKLTRYVPPTCSYHESRGSDVRCATR 407
K CS ++ K GV+I + TR+ P +Y SRGS +R A+R
Sbjct: 497 KLCS---MINKLLGVWIVL--PCTRWTVPLPAYFHSRGSPLRTASR 537
>SB_34092| Best HMM Match : RuvB_C (HMM E-Value=3.6)
Length = 142
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_26899| Best HMM Match : INCENP_ARK-bind (HMM E-Value=0.73)
Length = 311
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 257 NVLDLGQVKQVINSAAAKKCGARLD 281
>SB_22691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINENV-PAGKARPERRTERRFIYY 441
FD ++ID +D G + + V PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRFAYW 61
>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
Length = 1304
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 1204 NVLDLGQVKQVINSAAAKKCGARLD 1228
>SB_10201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1162
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 334 SLLDMYRRRAVITSHAAPTCGARLD 408
++LD+ + + VI S AA CGARLD
Sbjct: 855 NVLDLGQVKQVINSAAAKKCGARLD 879
>SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)
Length = 721
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 337 LLDMYRRRAVITSHAAPTCGARLD 408
+LD+ + + VI S AA CGARLD
Sbjct: 326 VLDLGQVKQVINSAAAKKCGARLD 349
>SB_3784| Best HMM Match : ICAM_N (HMM E-Value=4.1)
Length = 142
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 554 FDSRIIDIIDSLGPGINE-NVPAGKARPERRTERRFIYY 441
FD ++ID +D G + + + PA R ERRF Y+
Sbjct: 23 FDIKLIDTVDLEGGPVGKPDAPAALMNRPTRGERRFAYW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,833
Number of Sequences: 59808
Number of extensions: 397593
Number of successful extensions: 1255
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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