Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0982
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p...    29   3.5  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    29   3.5  

>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = +3

Query: 93  ELNSEYSNYDNSKNEYRKI*SQTRDKRVYEFVA*FL*TTTCHLELNSEYSNYVRTRVSRK 272
           ELN++Y+   N  +  +    Q  D RV++     L  +    ++   Y +Y+R  +   
Sbjct: 76  ELNNKYTEISNQNSRLQIKIGQEEDIRVFKIK--LLDVSKVWTDVKVNYQDYLRNTLDEH 133

Query: 273 ACSNLFLVIKSSGVYIFMRSKL 338
           + SN   V+K     I+ + KL
Sbjct: 134 SNSNKSDVLKEIDTLIYNKEKL 155


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 360  CSYHESRGSDVRCATRCETC---G*RFISLVIYKPSFCSSFRTSLPRWN-VLVNTGSERV 527
            C YH    +D RC  R  +    G   ++L + +  +   FR S    N VLV TG +R 
Sbjct: 1318 CKYH-GEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAHNGVLVFTGDKRS 1376

Query: 528  DYIDYSRIE 554
            D+++ S ++
Sbjct: 1377 DFVEVSVVD 1385


>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
            protein F15B9.7 protein.
          Length = 2577

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 360  CSYHESRGSDVRCATRCETC---G*RFISLVIYKPSFCSSFRTSLPRWN-VLVNTGSERV 527
            C YH    +D RC  R  +    G   ++L + +  +   FR S    N VLV TG +R 
Sbjct: 1318 CKYH-GEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAHNGVLVFTGDKRS 1376

Query: 528  DYIDYSRIE 554
            D+++ S ++
Sbjct: 1377 DFVEVSVVD 1385


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +3

Query: 360  CSYHESRGSDVRCATRCETC---G*RFISLVIYKPSFCSSFRTSLPRWN-VLVNTGSERV 527
            C YH    +D RC  R  +    G   ++L + +  +   FR S    N VLV TG +R 
Sbjct: 1318 CKYH-GEDTDERCRLRSVSFDGEGLLNVNLDLPRTQWTMKFRVSTIAHNGVLVFTGDKRS 1376

Query: 528  DYIDYSRIE 554
            D+++ S ++
Sbjct: 1377 DFVEVSVVD 1385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,590
Number of Sequences: 27780
Number of extensions: 298765
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)