Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0982
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25190.1 68418.m02986 ethylene-responsive element-binding pro...    29   4.3  
At3g05165.2 68416.m00563 sugar transporter, putative similar to ...    28   5.7  
At3g05165.1 68416.m00562 sugar transporter, putative similar to ...    28   5.7  
At1g61320.1 68414.m06911 hypothetical protein                          28   7.6  
At4g10620.1 68417.m01736 expressed protein                             27   10.0 
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family...    27   10.0 
At1g20530.1 68414.m02558 hypothetical protein                          27   10.0 

>At5g25190.1 68418.m02986 ethylene-responsive element-binding
           protein, putative ethylene responsive element binding
           protein homolog, Stylosanthes hamata, EMBL:U91857
          Length = 181

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 743 RKRTNF*TNPNAERTPSTKI*NRTLDR*FH 654
           R RTNF  NPNA  T S+K+ + TL    H
Sbjct: 58  RARTNFPYNPNAIPTSSSKLLSATLTAKLH 87


>At3g05165.2 68416.m00563 sugar transporter, putative similar to
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 467

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 437 PCNI*TVVLFFVPDEPSPLERSR*YRVRASRLYRL 541
           PC + T+ +FF+P+ P  L + R  +   S L+RL
Sbjct: 191 PCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRL 225


>At3g05165.1 68416.m00562 sugar transporter, putative similar to
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 467

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 437 PCNI*TVVLFFVPDEPSPLERSR*YRVRASRLYRL 541
           PC + T+ +FF+P+ P  L + R  +   S L+RL
Sbjct: 191 PCILQTIGIFFIPESPRWLAKIRLSKEVESSLHRL 225


>At1g61320.1 68414.m06911 hypothetical protein
          Length = 459

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 246 NSSIQNLIRDDKLWFTRIMQQIHRHACLWSGIRFY 142
           N  I N +++  L++TRI +  H+ + L   +RFY
Sbjct: 255 NILITNALKEANLYYTRIRRLYHQKSDLVDTLRFY 289


>At4g10620.1 68417.m01736 expressed protein
          Length = 597

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 445 ITREMKRYPHVSHLVAHRTSEPRDS**LHVGGTYRVSL 332
           +TRE +R  H+S  +  RT   ++   +H+GG  R+ +
Sbjct: 385 LTREEQRLVHISKELKPRTYRIKEGYTVHIGGLMRLDI 422


>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 565

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 32  DQRQSCLICCRILVNYNLSSRIKF 103
           D   SC +C RIL N+N S+ + F
Sbjct: 18  DAALSCDLCGRILENFNFSTEVTF 41


>At1g20530.1 68414.m02558 hypothetical protein
          Length = 614

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 264 IHAFERNSSIQNLIRDDKLWFTRIMQQIHRHACLWSGI 151
           IH         N +RD++LWF ++ + IHR + +W+ +
Sbjct: 374 IHKINNICLTINKLRDEELWF-QMKELIHRLSEMWNSM 410


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,276,645
Number of Sequences: 28952
Number of extensions: 269295
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)