Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0981
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.0  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    25   8.7  
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    25   8.7  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 256 CSWTSVMLGVRASSLLLRSLQTSYEEGHV 342
           C WTSV LG   ++LL+  L T +E  HV
Sbjct: 525 CHWTSVSLGGAVATLLM-LLATIFEWIHV 552


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 142 CVCVCVSNTWYCVSCFFYCFNVFFRHNKKNILAFCTPTL 26
           CV +CV+  W C   + Y    F  +     L F TP L
Sbjct: 309 CVLICVAAGWACFGIWMYYLWQFLEN-----LRFATPLL 342


>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 562 CVIQRLFHPSRMFPGDSS 615
           CVI  LF    +FPGDSS
Sbjct: 214 CVIAELFIGRPLFPGDSS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,811
Number of Sequences: 5004
Number of extensions: 57269
Number of successful extensions: 165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)