Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0981
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1695 + 35433975-35437040                                         29   3.0  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    29   3.0  
05_04_0397 - 20937280-20937386,20937494-20939681                       28   6.9  

>04_04_1695 + 35433975-35437040
          Length = 1021

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 530 GVLQHKAEILTVLFNGYFILHACFPEIVAD*VSRRIFSVGSFPIR 664
           G+ + K  + T+L +  F++  C+PE++   V   +F +G +  R
Sbjct: 836 GICKWKNPVTTILVHVLFLILVCYPELILPTVFLYLFVIGVWNYR 880


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 142 CVCVCVSNTWYCVSCFFYCFNVF 74
           C  +C + +W+ V C++YC   +
Sbjct: 526 CGSICRALSWFAVGCYYYCIKKY 548


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +2

Query: 530 GVLQHKAEILTVLFNGYFILHACFPEIVAD*VSRRIFSVGSFPIRW 667
           G+   +  I TVL +  F++  C+PE++   +   +F +G +  R+
Sbjct: 621 GIRSWRNPITTVLVHMLFLILICYPELILPTIFLYMFMIGLWNYRY 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,661,043
Number of Sequences: 37544
Number of extensions: 362275
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)