Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0981
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6252| Best HMM Match : BCL_N (HMM E-Value=7.9)                      31   1.3  
SB_38495| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)               29   3.0  
SB_13288| Best HMM Match : DUF433 (HMM E-Value=3.8)                    29   4.0  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)                    29   5.3  
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     29   5.3  
SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)                      28   9.2  
SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  
SB_6330| Best HMM Match : DUF678 (HMM E-Value=5.5)                     28   9.2  
SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.2  

>SB_6252| Best HMM Match : BCL_N (HMM E-Value=7.9)
          Length = 108

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+S TGS+   +  + EKL+ L++ G  RE
Sbjct: 14  ECLTQSATGSKQTEIADAREKLAILVASGKSRE 46


>SB_38495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+S TG +   +  + EKL+ L++ G  RE
Sbjct: 21  ECLTQSATGGKQTEIAEAREKLAILVASGKSRE 53


>SB_57955| Best HMM Match : Ribosomal_L41 (HMM E-Value=5)
          Length = 404

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+S TG++   +  + EKL+ L++ G  RE
Sbjct: 21  ECLTQSATGAKQTEIADAREKLAILVASGKSRE 53


>SB_13288| Best HMM Match : DUF433 (HMM E-Value=3.8)
          Length = 83

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+S TG +   +  + EKL+ L++ G  RE
Sbjct: 21  ECLTQSATGGKQTEIADAREKLAILVASGKSRE 53


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 359 CFLSVLTCPSSYE--VCRDLSSRLLARTPS 276
           CFLS +TC  S E   C D +S L A  PS
Sbjct: 700 CFLSAVTCKCSEERLTCLDCASELCACRPS 729


>SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)
          Length = 701

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+  TG +   +  + EKL  L++ GN RE
Sbjct: 21  ECLTQPATGGKQTEIADAREKLMILVASGNSRE 53


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+  TG +   +  + EKL  L++ GN RE
Sbjct: 183 ECLTQPATGGKQTEIADAREKLMILVASGNSRE 215


>SB_25409| Best HMM Match : PSD1 (HMM E-Value=7.2)
          Length = 889

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +3

Query: 36  VQKANIFFLLCLKNTLKQ*KKHDTQYHVFDTHTHTH 143
           ++K N+++ +  +   +  + H++  H  ++H HTH
Sbjct: 455 LRKVNLYYKMYRRTHKRYRRTHESYRHTHESHRHTH 490


>SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 498 DFPSYGWKKLPGSCNIR-PKF 557
           DFPSYGW    G C  R P+F
Sbjct: 60  DFPSYGWDNEYGECIARVPEF 80


>SB_6330| Best HMM Match : DUF678 (HMM E-Value=5.5)
          Length = 200

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 686 QCFTESTTGSETNPLKRSGEKLSRLLSPGNMRE 588
           +C T+S TG +   +  + EKL+ L++ G  RE
Sbjct: 21  ECLTQSATGGKQIEIADAREKLAILVASGKSRE 53


>SB_806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 96  KHDTQYHVFDTHTHTHAYIIISILFVYCQTFVIA*SLRSNCYFGRTCLR 242
           KH  + H++D H   H Y     + +Y  T+V   +  +  +  +TC R
Sbjct: 174 KH-MRVHIYDKHIRVHIYDKHIRVHIYDNTYVYTSTTNTRVHLRQTCRR 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,110,223
Number of Sequences: 59808
Number of extensions: 442647
Number of successful extensions: 975
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)