Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0972
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    28   1.3  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   5.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.1  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 200 HDKTALRLRPHVSSSTSRCDVHLFRLCIR*ADIARTKPSRLAE 328
           H +T    + HVS  +   DV  +R+C+  A +  T  S +A+
Sbjct: 399 HSRTLRHEKRHVSPKSPLIDVCWWRICVDEAQMVETSQSNVAQ 441


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 162 RLPTSICIKSGIFTIKQH*DYDLMSQALRHVVTSICSGFVSD 287
           RL TSI ++S I  ++   ++D +   L +V+TSI   F  D
Sbjct: 549 RLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPD 590


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 320 LAESAVISNHQRSMSFSPDLLSWTCF 397
           + ES ++ N     S+SPDL+S+  F
Sbjct: 907 ITESPIVPNQAAQKSYSPDLMSYFGF 932


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,425
Number of Sequences: 5004
Number of extensions: 60119
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)