Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0972
         (761 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.33 
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)                       28   7.2  

>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 143 GPPASVPPTHFYMYKEWDIHDKTALRLRPHVSSSTSRCDVHLFRLCIR*ADIARTKPSRL 322
           GP   VPP  F +  E  I D     L+P  S+  S  D  L+R  +   + A    +  
Sbjct: 489 GPTGLVPPVIFDLIDEQRIFDSA---LKPKGSTGPSGMDAELYRRILCSKNFATEGKTLR 545

Query: 323 AESAVISNHQRSMSFSPDLL 382
            E A+++ +    ++ P LL
Sbjct: 546 EEIAILTRNLLKFNYQPSLL 565


>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
          Length = 1019

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 517 KKKSGHPNQETIRRISR*GNKKEK 588
           K  SGH +Q+TI RIS   N+ EK
Sbjct: 475 KTNSGHKDQDTIIRISNSHNRNEK 498


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,149,178
Number of Sequences: 59808
Number of extensions: 434169
Number of successful extensions: 847
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)