Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0972
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF077541-12|AAY55886.1|  207|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z93397-5|CAD89745.1|  375|Caenorhabditis elegans Hypothetical
           protein ZC482.8 protein.
          Length = 375

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = -1

Query: 239 LRHEVVVSMLFYREYPTLYTYRSG*AVPMLVDLLYYEFILNLMTE*HRAWRRAYSAPDDK 60
           +R   V   L  ++Y   + +  G ++ +LVD+LY   +  L+ + H+  R+  +  +DK
Sbjct: 208 MRTSYVPYALIKKKYVLTFQFLDG-SMALLVDVLYMLLVTLLLIKLHKTARKRKNLNNDK 266

Query: 59  RRRLKRSI 36
            R   + I
Sbjct: 267 SRNTSKLI 274


>AL021469-3|CAA16290.2|  435|Caenorhabditis elegans Hypothetical
           protein Y116A8B.5 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 191 TLYTYRSG*AVPMLVDLLYYEFILNLMTE*HRAWR--RAYSAPDDKRRRLKR 42
           TLYT+  G A P  + +++Y  ++  + +  R  R  R  S PD    R+K+
Sbjct: 217 TLYTFVIGFAAPAFLIIIFYVQVIYALQKSSRNIRGARGISKPDGSSNRVKK 268


>AF077541-12|AAY55886.1|  207|Caenorhabditis elegans Hypothetical
           protein Y23H5A.8 protein.
          Length = 207

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 361 EFLAGSSQLDVLPIPALARIRVSNAVRFE 447
           EFLA  ++L+VLP+  L R+   +++  E
Sbjct: 59  EFLADMARLNVLPVDVLTRVSAQDSIATE 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,613,934
Number of Sequences: 27780
Number of extensions: 336069
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)