Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0972
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ...    31   0.84 
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac...    28   5.9  

>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 556

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = +2

Query: 440 GLRPMSSP---TS*GYTEMVSQYHQYRQEKK 523
           GLRP+SSP   +S GY +++ QY Q++ + +
Sbjct: 330 GLRPLSSPNAVSSIGYDQLIQQYQQHQNQSQ 360


>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
           8 / ERF transcription factor 8 (ERF8) identical to ERF
           transcription factor 8 GI:10567108 from [Arabidopsis
           thaliana]
          Length = 185

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 453 MGLKPDGIAYTNPSKSRNRKHVQLRRSG 370
           MGLKPD +A TNP+   +    ++R  G
Sbjct: 6   MGLKPDPVAPTNPTHHESNAAKEIRYRG 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,002
Number of Sequences: 28952
Number of extensions: 310002
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)