Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0969
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 693  HNLELKPIGRPTKNVPVSGRRIH 761
            ++L +K    PT N P+ G  IH
Sbjct: 1380 NSLTMKVRPHPTDNAPIHGYTIH 1402



 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 362  IIVDFGGGNVREPTKIPLS*STPSIGIMKNCN 267
            I++  GGG   + TKI  S  T   G+ K  N
Sbjct: 1120 IVIPSGGGIYTKDTKITSSSETILHGLKKYTN 1151


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 783 CILSTDPSEFDVLTPGHFWLVVQLVSAPSYD 691
           C+ S D     V     +W ++   SAP+ D
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFPSAPTID 352


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 783 CILSTDPSEFDVLTPGHFWLVVQLVSAPSYD 691
           C+ S D     V     +W ++   SAP+ D
Sbjct: 322 CMRSVDAKTISVQQWNSYWGILGFPSAPTID 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,287
Number of Sequences: 438
Number of extensions: 5140
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)