Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0969
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    33   0.21 
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    32   0.38 
At1g02305.1 68414.m00175 cathepsin B-like cysteine protease, put...    31   1.1  
At4g26760.1 68417.m03855 microtubule associated protein (MAP65/A...    30   2.0  
At2g18720.1 68415.m02180 eukaryotic translation initiation facto...    29   4.6  

>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 81  IYGLLSPGHCSRCWSLRHTDTRTS*IA-KFGKNSIFELNTLF*CCA--CG 221
           I  +L  GHC  CW+    ++ +     +FG N    +N L  CC   CG
Sbjct: 119 IGNILDQGHCGSCWAFGAVESLSDRFCIQFGMNISLSVNDLLACCGFRCG 168


>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 81  IYGLLSPGHCSRCWSLRHTDTRTS*IA-KFGKNSIFELNTLF*CCA--CG 221
           I  +L  GHC  CW+    ++ +     +FG N    +N L  CC   CG
Sbjct: 119 IGNILGLGHCGSCWAFGAVESLSDRFCIQFGMNISLSVNDLLACCGFRCG 168


>At1g02305.1 68414.m00175 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           [Nicotiana rustica] GI:609175; contains Pfam profile
           PF00112: Papain family cysteine protease
          Length = 362

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = +3

Query: 90  LLSPGHCSRCWSLRHTDTRTS*IA-KFGKNSIFELNTLF*CCA--CG 221
           +L  GHC  CW+    ++ +     K+  N    +N L  CC   CG
Sbjct: 125 ILDQGHCGSCWAFGAVESLSDRFCIKYNMNVSLSVNDLLACCGFLCG 171


>At4g26760.1 68417.m03855 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 578

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -1

Query: 606 EYLHTLQQRQKWYVDALNLSINDLVLIHNDNAPCQQWSLGRVEQIHPGLDGRVRVVTVRT 427
           ++   LQ+ QK   D L   +  +  +H+  A  +   L  V ++HP LD    V T   
Sbjct: 162 DFQRKLQELQKEKSDRLQKVLEFVSTVHDLCAVLRLDFLSTVTEVHPSLDEANGVQTKSI 221

Query: 426 QNSKLKRLVTKLSPL--PKMQ 370
            N  L RL   +  L   KMQ
Sbjct: 222 SNETLARLAKTVLTLKEDKMQ 242


>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
           subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
           putative 
          Length = 465

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +2

Query: 599 KYSNFQRRQKCNVDCLIHCQRVK*LIDTSAIS*LGAETNWTTNQKCPGVRTSNSLGSVDK 778
           KY     R    VDC  H   +  +++ +AI   GA      N+ CP  +T+  L SVD 
Sbjct: 112 KYKMKLLRHVSFVDCPGHDILMATMLNGAAIMD-GALLIIAANETCPQPQTAEHLASVDM 170

Query: 779 MH 784
           MH
Sbjct: 171 MH 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,389
Number of Sequences: 28952
Number of extensions: 381325
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)