Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0967
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D577B8 Cluster: PREDICTED: similar to WD and tet...    43   0.008
UniRef50_Q0C729 Cluster: Wd and tetratricopeptide repeat protein...    43   0.008
UniRef50_UPI000051A10B Cluster: PREDICTED: similar to WD and tet...    42   0.013
UniRef50_Q8N5D0 Cluster: WD and tetratricopeptide repeats protei...    37   0.65 
UniRef50_Q17KY4 Cluster: Homeobox protein abdominal-A, putative;...    36   1.5  
UniRef50_UPI00015B51D6 Cluster: PREDICTED: similar to ENSANGP000...    34   3.5  
UniRef50_A0PLY4 Cluster: Conserved hypothetical membrane protein...    34   4.6  

>UniRef50_UPI0000D577B8 Cluster: PREDICTED: similar to WD and
           tetratricopeptide repeats 1; n=1; Tribolium
           castaneum|Rep: PREDICTED: similar to WD and
           tetratricopeptide repeats 1 - Tribolium castaneum
          Length = 608

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 22/54 (40%), Positives = 31/54 (57%)
 Frame = +3

Query: 72  TSLQSNVQHVLFYVGAGHLSMEPNEHTFPKKSTTYVAFSNDGNELLVNLGSEQV 233
           TS Q      + Y   GHL+ E       K S TY+AF++ G+E+LVN+G EQ+
Sbjct: 241 TSPQPQNSDCVQYYAPGHLARENAGIMSIKLSVTYIAFNSAGSEMLVNIGGEQI 294


>UniRef50_Q0C729 Cluster: Wd and tetratricopeptide repeat protein;
           n=3; Culicidae|Rep: Wd and tetratricopeptide repeat
           protein - Aedes aegypti (Yellowfever mosquito)
          Length = 602

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 87  NVQHVLFYVGAGHLSMEPNE--HTFPKKSTTYVAFSNDGNELLVNLGSEQV 233
           NV+ V +Y   GHLS         F +K+ TY+ FS DG+ELLVN+ SEQ+
Sbjct: 218 NVRCVQYYC-PGHLSRNKGTVYSIFNQKAITYLTFSPDGSELLVNMASEQI 267


>UniRef50_UPI000051A10B Cluster: PREDICTED: similar to WD and
           tetratricopeptide repeats 1; n=2; Apocrita|Rep:
           PREDICTED: similar to WD and tetratricopeptide repeats 1
           - Apis mellifera
          Length = 658

 Score = 42.3 bits (95), Expect = 0.013
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +3

Query: 108 YVGAGHLSMEPNEHTFPKKSTTYVAFSNDGNELLVNLGSEQV 233
           Y  AGHL     +      +TTY+ FS DGNELLVN+G EQ+
Sbjct: 268 YFIAGHLHSRQRDGN-RSLTTTYLTFSADGNELLVNMGGEQI 308


>UniRef50_Q8N5D0 Cluster: WD and tetratricopeptide repeats protein
           1; n=30; Eumetazoa|Rep: WD and tetratricopeptide repeats
           protein 1 - Homo sapiens (Human)
          Length = 677

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 108 YVGAGHLSMEPNEHTFPKKS--TTYVAFSNDGNELLVNLGSEQV 233
           Y  AGHL ++  ++    +    TYV FS +G ELLVN+G EQV
Sbjct: 249 YYVAGHLPVKLPDYNNRLRVLVATYVTFSPNGTELLVNMGGEQV 292


>UniRef50_Q17KY4 Cluster: Homeobox protein abdominal-A, putative;
           n=1; Aedes aegypti|Rep: Homeobox protein abdominal-A,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 443

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -2

Query: 595 SLAAVGSPGSVLSGTRTSYSHSEGETETVISETHLTDKDD 476
           SL +V S G+ LS       HSE +  ++ SE HL+DKD+
Sbjct: 111 SLQSVSSIGTGLSHLANGQMHSENDLSSIKSEPHLSDKDE 150


>UniRef50_UPI00015B51D6 Cluster: PREDICTED: similar to
           ENSANGP00000031850; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000031850 - Nasonia
           vitripennis
          Length = 816

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 580 LLRRVTTLGYCVHNMSRSAENLIETPTTLLVGCINTPGLLPRTVLVPF 723
           L +R T++G   HN S S+  +  T TT    C  T  L+ R +++PF
Sbjct: 393 LQQRRTSIGASAHNRSSSSNGVCTTTTTTTTACQVTAHLVNRHMVLPF 440


>UniRef50_A0PLY4 Cluster: Conserved hypothetical membrane protein;
           n=1; Mycobacterium ulcerans Agy99|Rep: Conserved
           hypothetical membrane protein - Mycobacterium ulcerans
           (strain Agy99)
          Length = 490

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 313 WVYFVVQIAWTLVAAAGGHENKHQEARTCSEPRF 212
           W+  VV IA +LVA  GG +  H +A  C EP F
Sbjct: 19  WLLCVV-IAVSLVACGGGRQKTHYDAAPCPEPNF 51


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 835,962,309
Number of Sequences: 1657284
Number of extensions: 17620887
Number of successful extensions: 42572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42565
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)