BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0967 (782 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.3 SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 4.0 SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 26 5.3 SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 7.0 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.0 SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 7.0 SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 7.0 SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 9.3 SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 9.3 SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.3 >SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 749 Score = 28.3 bits (60), Expect = 1.3 Identities = 15/53 (28%), Positives = 26/53 (49%) Frame = +1 Query: 436 NWNRGRKCQISTSSHPYQLDASLISPSLSHLHCGSMRFEYQIGQNLATLLRRV 594 +WN +K + SS + L PS H+H S+ E +G ++A+ R+ Sbjct: 31 HWNPLKKIHSADSSRRRSTSSQLNQPSNYHMH-SSLHEEVSVGSSIASPSSRI 82 >SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1087 Score = 26.6 bits (56), Expect = 4.0 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -1 Query: 134 HGQVTCTNIKQHVLHIGLQT 75 H Q+T +N+K + H+G QT Sbjct: 325 HSQITLSNVKNNHSHVGSQT 344 >SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces pombe|chr 2|||Manual Length = 87 Score = 26.2 bits (55), Expect = 5.3 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%) Frame = -2 Query: 634 QILTCCEHSSLVWSLAAVGSPGSVLSGTRTSYS-----HSEGETETVISETHLTDKDDCL 470 +I+ +H+S+ ++ AV + G + G +T+Y+ S+GE++ I+ LT +D L Sbjct: 22 RIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVRSKGESDDCIN--RLTTQDGLL 79 >SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharomyces pombe|chr 1|||Manual Length = 671 Score = 25.8 bits (54), Expect = 7.0 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = -3 Query: 759 VVQVEQVHLPVMKWYKNSSG*KTRCVNAAHQES 661 V V++V+ +KW KN+ ++ C+N + +E+ Sbjct: 446 VKDVDEVYYESLKWIKNNDVDESLCLNFSVEEN 478 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 25.8 bits (54), Expect = 7.0 Identities = 8/26 (30%), Positives = 17/26 (65%) Frame = +1 Query: 265 QQLLLMSRLFEPQSIPMVHQGMEKGY 342 +++ ++ L EP ++P +HQ + GY Sbjct: 784 EEIQRLTMLLEPHAVPPIHQIKQTGY 809 >SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar membrane transporter Hmt1|Schizosaccharomyces pombe|chr 3|||Manual Length = 830 Score = 25.8 bits (54), Expect = 7.0 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = +2 Query: 53 WWPLVKHKSAVQCAARAVLCWCRSLVHGTERAHLPQEVDDV 175 WWP K+ V C +L W L+ + LP+ D + Sbjct: 83 WWPC---KTTVVCLILFLLFWIIVLISCADSKALPKNADSI 120 >SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharomyces pombe|chr 1|||Manual Length = 359 Score = 25.8 bits (54), Expect = 7.0 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +3 Query: 498 VSDITVSVSPSLWEYEVRVPDRTEPGD 578 +S I V PS WEY+V E GD Sbjct: 191 ISGINAEVMPSQWEYQVGPCAGIEMGD 217 >SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylglycerol ethanolaminesphotranferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 386 Score = 25.4 bits (53), Expect = 9.3 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +2 Query: 662 LSWWAALTHLVFYPELFLYHFITGRC 739 L W A + YP F +HF+T C Sbjct: 265 LQWMAVFSLYAKYPAFFEHHFLTIFC 290 >SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 25.4 bits (53), Expect = 9.3 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -3 Query: 369 YFNYLP*H*IPFFHPLMDHGYTLWF 295 Y LP H PFF PL + Y L F Sbjct: 206 YSQSLPYHMFPFFFPLNKYVYLLLF 230 >SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 534 Score = 25.4 bits (53), Expect = 9.3 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -2 Query: 559 SGTRTSYSHSEGETET 512 + +RTSY HSEG T T Sbjct: 109 TSSRTSYDHSEGITST 124 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,384,406 Number of Sequences: 5004 Number of extensions: 72073 Number of successful extensions: 202 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 195 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 202 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 379359666 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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