Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0967
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 28 1.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 4.0
SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce... 26 5.3
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 7.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.0
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 7.0
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 7.0
SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/ diacylg... 25 9.3
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 25 9.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 9.3
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 436 NWNRGRKCQISTSSHPYQLDASLISPSLSHLHCGSMRFEYQIGQNLATLLRRV 594
+WN +K + SS + L PS H+H S+ E +G ++A+ R+
Sbjct: 31 HWNPLKKIHSADSSRRRSTSSQLNQPSNYHMH-SSLHEEVSVGSSIASPSSRI 82
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 134 HGQVTCTNIKQHVLHIGLQT 75
H Q+T +N+K + H+G QT
Sbjct: 325 HSQITLSNVKNNHSHVGSQT 344
>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = -2
Query: 634 QILTCCEHSSLVWSLAAVGSPGSVLSGTRTSYS-----HSEGETETVISETHLTDKDDCL 470
+I+ +H+S+ ++ AV + G + G +T+Y+ S+GE++ I+ LT +D L
Sbjct: 22 RIIQAKDHASVQINVCAVDAEGRQIPGEKTTYAISGFVRSKGESDDCIN--RLTTQDGLL 79
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 759 VVQVEQVHLPVMKWYKNSSG*KTRCVNAAHQES 661
V V++V+ +KW KN+ ++ C+N + +E+
Sbjct: 446 VKDVDEVYYESLKWIKNNDVDESLCLNFSVEEN 478
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 265 QQLLLMSRLFEPQSIPMVHQGMEKGY 342
+++ ++ L EP ++P +HQ + GY
Sbjct: 784 EEIQRLTMLLEPHAVPPIHQIKQTGY 809
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 53 WWPLVKHKSAVQCAARAVLCWCRSLVHGTERAHLPQEVDDV 175
WWP K+ V C +L W L+ + LP+ D +
Sbjct: 83 WWPC---KTTVVCLILFLLFWIIVLISCADSKALPKNADSI 120
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 498 VSDITVSVSPSLWEYEVRVPDRTEPGD 578
+S I V PS WEY+V E GD
Sbjct: 191 ISGINAEVMPSQWEYQVGPCAGIEMGD 217
>SPAC22A12.10 |||diacylglycerol cholinephosphotranferase/
diacylglycerol ethanolaminesphotranferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 662 LSWWAALTHLVFYPELFLYHFITGRC 739
L W A + YP F +HF+T C
Sbjct: 265 LQWMAVFSLYAKYPAFFEHHFLTIFC 290
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 369 YFNYLP*H*IPFFHPLMDHGYTLWF 295
Y LP H PFF PL + Y L F
Sbjct: 206 YSQSLPYHMFPFFFPLNKYVYLLLF 230
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 559 SGTRTSYSHSEGETET 512
+ +RTSY HSEG T T
Sbjct: 109 TSSRTSYDHSEGITST 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,406
Number of Sequences: 5004
Number of extensions: 72073
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -