Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0967
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0140 - 1674305-1674586,1674683-1674838,1675676-1676622,167...    31   0.78 
06_03_1069 - 27345207-27345488,27345746-27346078,27346252-273470...    28   7.3  
01_01_0250 + 2052599-2053358,2053581-2053604,2054813-2054848,205...    28   7.3  

>10_01_0140 -
           1674305-1674586,1674683-1674838,1675676-1676622,
           1678976-1679054,1679168-1679207,1679580-1679767,
           1679869-1680024,1680752-1681713,1681866-1681914
          Length = 952

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 159 WGRCARSVPWTS-DLHQHKTARAAHWTADLCFTSGHH 52
           W +  R +   + D+ ++K +R  HW A L  TSG H
Sbjct: 459 WSQFQRELSLKNIDMFEYKQSRVLHWVASLLVTSGFH 495


>06_03_1069 -
           27345207-27345488,27345746-27346078,27346252-27347041,
           27347153-27347351,27347522-27347667,27347823-27348094,
           27348161-27348262,27348351-27348470,27348576-27348729,
           27348986-27349114,27349554-27349900
          Length = 957

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 123 HLSMEPNEHTFPKKSTTYVAFSNDGNELLVNLGSEQVR 236
           +LS +P  H  P  S    AFS+  NEL+ ++   +VR
Sbjct: 752 YLSKDPRFHALPLTSQRVAAFSDTVNELVYDVLISKVR 789


>01_01_0250 +
           2052599-2053358,2053581-2053604,2054813-2054848,
           2055047-2056284
          Length = 685

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/66 (25%), Positives = 27/66 (40%)
 Frame = +1

Query: 451 RKCQISTSSHPYQLDASLISPSLSHLHCGSMRFEYQIGQNLATLLRRVTTLGYCVHNMSR 630
           R+C   T ++P+ L  S   PS S   CG   F+          L R    GY +  +S 
Sbjct: 33  RRCGNVTIAYPFWLPDSSPPPSSSSAPCGPAAFQVNCDNGSRASLARSFRSGYKILGVSY 92

Query: 631 SAENLI 648
           +   ++
Sbjct: 93  ANRTVV 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,380,653
Number of Sequences: 37544
Number of extensions: 516493
Number of successful extensions: 1331
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)