Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0967
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)               39   0.004
SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)                 32   0.46 
SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)                 29   5.6  
SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12)               29   5.6  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    29   5.6  
SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)                    28   7.4  
SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)                   28   7.4  

>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +3

Query: 108 YVGAGHLSMEPNEHTFPKKSTTYVA----FSNDGNELLVNLGSEQV 233
           Y   GHL        FPKK  TYVA    FS DG+E+L N+G EQV
Sbjct: 217 YFAPGHLPPRLTRD-FPKKFRTYVATYVTFSPDGSEVLTNMGGEQV 261


>SB_21141| Best HMM Match : Collagen (HMM E-Value=0.01)
          Length = 738

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +1

Query: 460 QISTSSHPYQLDASLISPSLSHLHCGSMRFEYQIGQNLATLLRRVTTLGYCVHNMSRSAE 639
           Q     H Y+  A +   SL++ H G  R    I +     LR +     CV NMS S E
Sbjct: 389 QTGMEDHNYEDPARMAQQSLTNGHTGPRRKANNIYEPSTLALRPLKNAPNCVRNMSTSDE 448

Query: 640 NL 645
           +L
Sbjct: 449 SL 450


>SB_56833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 75  SLQSNVQHVLFYVGAGHLSMEPNEHTFPKKSTTYVAFSN 191
           + Q+N ++ L + GAGH  ME +     ++  T++   N
Sbjct: 101 AFQTNNEYTLVFTGAGHTGMEGSMMNIVERGETFLVCEN 139


>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
          Length = 853

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 501 SDITVSVSPSLWEYEVRVPDRTEPGDPTAASDHT 602
           SD TVS  P+         D T P DPTA SD T
Sbjct: 35  SDPTVSSDPTAPSDPTGPSDPTAPSDPTAPSDPT 68


>SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12)
          Length = 227

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 598 WSLAAVGSPGSVLSGTRTSYSHSEGETETV 509
           WS AA    G +L GTR  +SH+ G T ++
Sbjct: 172 WSFAAQARRGRLLKGTR-PFSHNHGPTPSI 200


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 253 NKHQEARTCSEPRFTSNSFPSLLKATYVVDFLGKVCSFGS 134
           +KH E   C+EP +TS+ +   L   ++   LGK C F S
Sbjct: 858 HKHCEENNCNEPDYTSSIY---LAEKWLQGRLGKRCDFKS 894


>SB_30541| Best HMM Match : PSI_PsaJ (HMM E-Value=4)
          Length = 368

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 601 VWS-LAAVGSPGSVLSGTRTSYSHSEGE 521
           +W  +  VGSP S L+GT T Y H+ G+
Sbjct: 339 IWKGVYGVGSPYSRLNGTVTCYFHTRGQ 366


>SB_4602| Best HMM Match : dsrm (HMM E-Value=5.9e-14)
          Length = 579

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 616 HNMSRSAENLIETPTTLLVGCINTPGLL-PRTVL-VPFHHRQVYLFDLNNGR 765
           H    S E + ETP T+     ++PG   P  +L  P H  QV++  +N  R
Sbjct: 169 HEAESSHEAMFETPETIGANIFHSPGHEGPLNLLKTPKHVNQVHITQVNTAR 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,306,785
Number of Sequences: 59808
Number of extensions: 569109
Number of successful extensions: 1468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)