Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0965
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4)                    126   2e-29
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      41   0.001
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_55698| Best HMM Match : Cornifin (HMM E-Value=3.1)                  28   6.9  
SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_54572| Best HMM Match : CARDB (HMM E-Value=4.4)
          Length = 292

 Score =  126 bits (304), Expect = 2e-29
 Identities = 68/169 (40%), Positives = 99/169 (58%), Gaps = 6/169 (3%)
 Frame = +2

Query: 167 EIDQNLLLQFSCMNTTDREELIKQMQKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDY- 343
           ++DQ+L+ +FS + TTDRE LI ++QKLL   LN +  +FFLDM+NWNLQAAI  + D+ 
Sbjct: 6   DVDQDLMAKFSSLGTTDREVLIMELQKLLDFQLNQSGCAFFLDMANWNLQAAIGAFYDFN 65

Query: 344 -TSPKLPSMSV--KASEGPTGSLEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLG-A 511
            ++ KLPSMS     + G   S+ P   F + W + NTGTE+WP    L   GG+ LG  
Sbjct: 66  CSNDKLPSMSFVRDVTIGEGESVPPNTAFVKTWRLQNTGTEKWPNGVFLKFTGGDQLGPV 125

Query: 512 TPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQ-IGDTLW 655
           + V + PL  G    V++ + AP  +G  +  + + T  G    GD +W
Sbjct: 126 SSVTVQPLDPGECVDVSVNMFAPDRTGMFQGQWRMCTPTGSSYFGDVIW 174


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = +2

Query: 401  LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATP-VYLPPLPVGHSTTVTLKLVA 577
            + PG +F + W + N G   W         G  P+ A P V  P +  G    + +  +A
Sbjct: 794  VSPGEQFLKRWIVRNDGMVPWSS----KMTGSIPISAAPAVTAPEIHPGEEGEIAVSFIA 849

Query: 578  PSTSGTHKSFFHLVTDKGEQIGDTLW 655
            P   G++ S +  V D G  +G   W
Sbjct: 850  PDAFGSYDSKWQFVLD-GRNVGPLFW 874


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 504  RGSPPACINLQQPGHCSVPVLTILQF 427
            RGS  A ++L QPG+ SV V  +L+F
Sbjct: 1504 RGSVVAAVSLHQPGNVSVDVAPLLKF 1529


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -3

Query: 618 TK*KKLLWVPEVEGATNFNVTVVECPTGRGGK*TG---VAPRGSPPACINLQQPGHCSVP 448
           TK KK  W+ E+  A +     ++   GR     G     P G  P C N  + GH ++ 
Sbjct: 66  TKKKKPEWIAEICAAFSRESAPLDSDVGRAPIARGRRDQEPSGDRPTCYNCGERGHVAIG 125

Query: 447 VLTILQF*SKRAPGSKL 397
                QF  KR   S +
Sbjct: 126 CRNPPQF-RKRTEASSM 141


>SB_55698| Best HMM Match : Cornifin (HMM E-Value=3.1)
          Length = 483

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 567 FNVTVVECPTGRGGK*TGVAPRGSPPACINLQQP 466
           F++TV   P+GRG K      RG+P     L  P
Sbjct: 350 FDITVTPIPSGRGSKEKSTPSRGTPGDKFFLSSP 383


>SB_3285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1437

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 434 SIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLP 538
           S+ NT    W  CCR+I     P   TPV   P+P
Sbjct: 811 SVQNTA---WTSCCRMIYVKTNPKLNTPVGFWPIP 842


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,724
Number of Sequences: 59808
Number of extensions: 414333
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)