Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0965
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    78   8e-15
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   3.5  
Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
 Frame = +2

Query: 170 IDQNLLLQFSCMNTTDREELIKQMQKLLGPSL-NYNTASFFLDMSNWNLQAAICCYLDYT 346
           ++ +L+ + S M T DRE LI + ++++ P +  ++ A+F+LD++NWNL  AI  + D  
Sbjct: 4   LENSLISKMSQMTTDDRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQN 63

Query: 347 SPKLP----------SMSVKA---SEGPTGSL--EPGARFDQNWSIVNTGTEQWPGCCRL 481
              L           S +VK     E  +GS    P + F   W +VN G  +WP   RL
Sbjct: 64  GDLLHMEEAFRQTCLSSTVKECTNREAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTRL 123

Query: 482 IQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLW 655
               G+P+         L    S  + +++  P+  G  K+ F  VT +    G+++W
Sbjct: 124 AFVDGDPIDYEVWKDTVLDPDQSENIEIRISCPAEMGDFKARFQFVTPQNFFFGESIW 181


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 561 VTVVECPTGRGGK*TGVAPRGS 496
           V + ECPTGR G+  G  P+GS
Sbjct: 2   VCIRECPTGRPGREGGDGPKGS 23


>Z75534-1|CAH04713.2|  326|Caenorhabditis elegans Hypothetical
           protein F08A10.2 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +3

Query: 75  ITNS*LFISYLFIYIKRRELKWTLMAPQYLEKLIKIYYYNLVV*IQQTEKNLLNKC 242
           I NS LF+  L+ +I      W  +A    +KLIKI Y   ++ +Q   K L N C
Sbjct: 111 IQNSLLFLLALYRFIIVFFPSWKSVASTNFKKLIKILYIFFIL-VQIIHKLLQNIC 165


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 164 GEIDQNLLLQFSCMNTTDREELIKQM 241
           G + +NLL     +NT D  EL+KQM
Sbjct: 139 GRLGENLLHVCMLLNTADMNELVKQM 164


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 534 RGGK*TGVAPRGSPPACINLQQPGHCS 454
           R G+ TG   RG P  C + Q+ GH S
Sbjct: 154 RSGRRTGRRGRGGPGHCFHCQEHGHIS 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,847,464
Number of Sequences: 27780
Number of extensions: 339859
Number of successful extensions: 836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)