Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0965
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -3

Query: 597 WVPEVEGATNFNVTV----VECPTGRGGK*TGVAPR 502
           W+ EV   T  N  +    +EC  G+G K  G+AP+
Sbjct: 5   WIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQ 40


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +1

Query: 574  SPFNFWNP 597
            +PFNFWNP
Sbjct: 1159 TPFNFWNP 1166


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +1

Query: 478 INTSWW*TSWRYTCLFTTPSCWTFHNSYI 564
           ++  W    WR  C F      TFH   I
Sbjct: 79  LDVDWLHNIWRPDCFFKNAKKVTFHEMSI 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,657
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)