Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0964
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    83   2e-17
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    82   3e-17
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   0.81 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.1  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   3.3  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   4.3  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   4.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   4.3  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   5.7  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   10.0 
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   10.0 
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    24   10.0 

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 42/76 (55%), Positives = 54/76 (71%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
           RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK
Sbjct: 23  RPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAK 82

Query: 281 RKREELSNVLAQMRKA 328
            K EEL++V+   R A
Sbjct: 83  GKIEELTSVIQSSRLA 98


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 42/76 (55%), Positives = 54/76 (71%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
           RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K+RLGT  RAK
Sbjct: 23  RPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAK 82

Query: 281 RKREELSNVLAQMRKA 328
            K EEL++V+   R A
Sbjct: 83  GKIEELTSVIQSSRLA 98


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 167  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 322
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +1

Query: 157  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 258
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 155 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 286
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = +2

Query: 203 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 319
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 228 LSFDTLSNSIALFSY*ACPTTS 163
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 205
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 216 TLSNSIALFSY*ACPTTSRTKSRTNLECF 130
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 301 AKFFTLPLGADVCAQSSLQELQSTLV 224
           A+FFT PL ++VCA + +   +  ++
Sbjct: 560 AQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 272 GCVCPIVASRTSEHACLLT 216
           GCVCP++    SE A +L+
Sbjct: 189 GCVCPLLIDLESEDADVLS 207


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 337 WASCLPHLSEHVAKFFTL 284
           +ASCLP L++  +KF  L
Sbjct: 536 YASCLPILAKQASKFLNL 553


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 105 GLIHDGFVCDTLAASGY 55
           G+ + GFVCD+LA  G+
Sbjct: 46  GVGNFGFVCDSLAKQGF 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,006
Number of Sequences: 5004
Number of extensions: 26570
Number of successful extensions: 63
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)