Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0964
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 100 4e-22
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 98 3e-21
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 1.8
09_04_0377 + 17086775-17088310 28 3.1
03_06_0682 - 35516081-35518303 28 3.1
11_02_0038 - 7631462-7634428,7635975-7636250 27 4.1
08_01_0873 + 8564560-8564647,8568122-8568309 27 5.5
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 27 5.5
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 26 9.5
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 26 9.5
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 100 bits (240), Expect = 4e-22
Identities = 49/79 (62%), Positives = 58/79 (73%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP+ KG TK FVR L+REVVG A YEKR ELLKV KDKRALK KR+LGTH RAK
Sbjct: 28 RPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87
Query: 281 RKREELSNVLAQMRKAARP 337
+KREE++ V+ +MR + P
Sbjct: 88 KKREEMAGVIRKMRMGSTP 106
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 97.9 bits (233), Expect = 3e-21
Identities = 48/74 (64%), Positives = 56/74 (75%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP+ KG TK FVR+L+REV G A YEKR ELLKV KDKRALK KR+LGTH RAK
Sbjct: 28 RPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87
Query: 281 RKREELSNVLAQMR 322
+KREE++ VL +MR
Sbjct: 88 KKREEMAGVLRKMR 101
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 179 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 304
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 221 KDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKA--ARPGSSPSPLSD 364
K R K KRR + R KRK + ++ + +A A GSSPSPL D
Sbjct: 266 KRSRRHKKSKRRGRSSRRKKRKSNDTASEGSSEEEAVAAASGSSPSPLRD 315
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +2
Query: 104 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 271
P + L+ + F+++++ +++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 272 RAKRKREELSNVL 310
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 224 DKRALKFLKRRLGTHIRAKRKREELSNV 307
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>08_01_0873 + 8564560-8564647,8568122-8568309
Length = 91
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 224 DKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAARPGSSPSPLSDK 367
D + ++ + L + + A++++++L + RK A PGSSPSP K
Sbjct: 45 DYKDVQVMFEMLTSELEAQKQQQQL--LPPSPRKPAWPGSSPSPAPAK 90
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
+ A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK + +
Sbjct: 644 KAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSLE---E 699
Query: 281 RKREELSNVLAQMRKAARPG 340
R + + S VLA + G
Sbjct: 700 RLQSQESKVLALEESLVKMG 719
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 224 DKRALKFLKRRLGTHIRAKRKREELSNVL 310
DK L K +G + +R+RE+LSN+L
Sbjct: 498 DKVLLNVRKLYIGLSMSKRRQREQLSNIL 526
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 147 TNLECFV*RPFSLAGLIHDGFVCDTLAA 64
+ LECF+ P SLA + F C T A
Sbjct: 525 SGLECFLMDPDSLASELQKKFACSTTTA 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,826,491
Number of Sequences: 37544
Number of extensions: 178943
Number of successful extensions: 455
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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