Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0964
         (398 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   102   1e-22
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   0.93 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.2  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    29   1.6  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z72517-1|CAA96691.1|  285|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  102 bits (244), Expect = 1e-22
 Identities = 48/76 (63%), Positives = 60/76 (78%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
           R  R KG+ +K +K VR+LVRE+ G A YE+R +E+L++SKDKRALKFLKRR+GTH RAK
Sbjct: 27  RQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAK 86

Query: 281 RKREELSNVLAQMRKA 328
            KREEL NV+   RKA
Sbjct: 87  GKREELQNVIIAQRKA 102


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 238
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +2

Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 238
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 98  IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 232
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 35  KATKQLKYPLAARVSQTKPS*IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 214
           KA KQ K       ++ K   I    L+  Q +HS+ VR++ +      + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765

Query: 215 VSKDKR 232
           ++K K+
Sbjct: 766 MTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/66 (28%), Positives = 35/66 (53%)
 Frame = +2

Query: 35  KATKQLKYPLAARVSQTKPS*IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 214
           KA KQ K       ++ K   I    L+  Q +HS+ VR++ +      + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765

Query: 215 VSKDKR 232
           ++K K+
Sbjct: 766 MTKGKK 771


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 107 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 280
           AR+K  + K  K + +  R+     +   +A E LK+ ++++  K L  +R+    +  K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594

Query: 281 RKREE 295
           RK EE
Sbjct: 595 RKAEE 599


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 146 VRDLVREVVGHAQYEKRAMELLKV 217
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 155 LVREVVGHAQYEKRAMELLKV 217
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>Z72517-1|CAA96691.1|  285|Caenorhabditis elegans Hypothetical
           protein T28F4.1 protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +2

Query: 146 VRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 325
           + DL  E+ GH         L  V+  K + K  K+R G   RA RKR  + N ++ + K
Sbjct: 7   LNDLTEEIFGH---------LCNVALHKCSDKSEKKRAGCGGRAMRKRVLIKNFVSDLFK 57

Query: 326 AARPGSS 346
             +  SS
Sbjct: 58  MPKKTSS 64


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 221 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 319
           K+ R +KF   R L  H+R + K +ELS  +  M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,213,609
Number of Sequences: 27780
Number of extensions: 148925
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)