Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0964
(398 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 98 2e-21
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 97 3e-21
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 97 5e-21
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 74 3e-14
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi... 27 6.1
At5g05440.1 68418.m00586 expressed protein low similarity to cyt... 26 8.0
At3g56790.1 68416.m06316 RNA splicing factor-related contains we... 26 8.0
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi... 26 8.0
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 97.9 bits (233), Expect = 2e-21
Identities = 48/81 (59%), Positives = 58/81 (71%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP KG +K + F+R+L++EV G A YEKR ELLKV KDKRALK KR+LGTH RAK
Sbjct: 24 RPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 83
Query: 281 RKREELSNVLAQMRKAARPGS 343
RKREE+S+VL +MR S
Sbjct: 84 RKREEMSSVLRKMRSGGAGAS 104
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 97.5 bits (232), Expect = 3e-21
Identities = 47/74 (63%), Positives = 57/74 (77%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP KG +K + F+R+L++EV G A YEKR ELLKV KDKRALK KR+LGTH RAK
Sbjct: 28 RPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87
Query: 281 RKREELSNVLAQMR 322
RKREE+S+VL +MR
Sbjct: 88 RKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 96.7 bits (230), Expect = 5e-21
Identities = 48/74 (64%), Positives = 56/74 (75%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP KG +K + F+R L+REV G A YEKR ELLKV KDKRALK KR+LGTH RAK
Sbjct: 28 RPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 87
Query: 281 RKREELSNVLAQMR 322
RKREE+S+VL +MR
Sbjct: 88 RKREEMSSVLRKMR 101
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 74.1 bits (174), Expect = 3e-14
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +2
Query: 101 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 280
RP KG +K + F+R+L++EV G A YEKR ELLKV+ KR+LGTH RAK
Sbjct: 28 RPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVA---------KRKLGTHKRAK 78
Query: 281 RKREELSNVLAQMR 322
RKREE+S+VL +MR
Sbjct: 79 RKREEMSSVLRKMR 92
>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
protein similar to BPM [Hordeum vulgare] GI:20513851
Length = 968
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 202 GVT*GVKRQACSEVLEATIGHTHPRQEEA*RT*QRARSDEEGSS 333
G+ G K+++ +++ +A +GH HP ++ R R DE S
Sbjct: 185 GLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDENVDS 228
>At5g05440.1 68418.m00586 expressed protein low similarity to
cytokinin-specific binding protein [Vigna radiata]
GI:4190976
Length = 203
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 319 HLSEHVAKFFTLPLGADVCAQSSLQELQS 233
H+ EHVA T +G D C S +Q + +
Sbjct: 40 HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68
>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
similarity to U4/U6-associated RNA splicing factor [Homo
sapiens] gi|2853287|gb|AAC09069
Length = 206
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 188 EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 313
EK+ L +V+K+K K +++ L ++K K L VLA
Sbjct: 155 EKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196
>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
protein
Length = 972
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 202 GVT*GVKRQACSEVLEATIGHTHPRQEEA*RT*QRARSDEEGSS 333
G+ G K+++ +++ +A +GH HP ++ R R DE S
Sbjct: 193 GLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNTFDENVDS 236
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,382
Number of Sequences: 28952
Number of extensions: 141651
Number of successful extensions: 383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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