Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0962
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024838-5|AAY43990.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical
           protein C23H4.3 protein.
          Length = 631

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 520 YYSAPCLYFVIFTFQV*QR*TIPVFLYFH 434
           +YS  CLY  IFT +       PV +YFH
Sbjct: 94  HYSEDCLYINIFTSEKCLNSKCPVIVYFH 122


>AF022969-1|AAB69894.3|  391|Caenorhabditis elegans Hypothetical
           protein C29G2.5 protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 153 FIFYYLNFC*QYVFFFQCSLLWLSRRVSA 67
           F+FY ++FC Q +FFF    L +S  VS+
Sbjct: 219 FVFYGISFCQQPIFFFITGTLVVSSWVSS 247


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 334 NNMYCQWFIGPRVCYIKI**I*ILF 408
           +++YC  F+ P+VC++++  I ILF
Sbjct: 276 DHVYCDTFVSPKVCFLELACIGILF 300


>AC024838-5|AAY43990.1|  301|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.8 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -1

Query: 286 CLMFSCILFSVYSDLLKRNKKLYL*HTQRKGLTKYISSLKSYIK 155
           C+M SC  F + +D +   KKL L   +R  L + + S KS+IK
Sbjct: 234 CVMNSCEEFLIKTDKVDMAKKLIL--AERFSLCELMVSWKSFIK 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,478
Number of Sequences: 27780
Number of extensions: 272627
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)