Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0961
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    95   9e-21
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    34   0.019
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    28   1.2  
SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex |...    26   3.7  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   6.5  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    25   6.5  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   8.7  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   8.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   8.7  
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      25   8.7  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 94.7 bits (225), Expect = 9e-21
 Identities = 53/140 (37%), Positives = 78/140 (55%)
 Frame = +3

Query: 87  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 266
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60

Query: 267 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGVQ 446
           +CRY ++DFE+ +  +G      + K+  + W PD A +K KM+Y S  D L+++  G+ 
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIG 114

Query: 447 KYIQATDLSEAFYEAVQEKL 506
             IQATD SE  YE V EK+
Sbjct: 115 TDIQATDFSEVAYETVLEKV 134


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
 Frame = +3

Query: 153 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 332
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 333 KKQKLFLMLWCPDTAKVKKKMLYFSLFDALKK--SLVGVQKYIQATDLSEAFYEAVQEKL 506
           KK  L L+ + P+ A V++KMLY S   A  +  +L  + +   A+   E  Y+ + + L
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSL 136

Query: 507 RATDRQ 524
              + Q
Sbjct: 137 SKQEDQ 142


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = -1

Query: 533 SCLLAIGGPKLLLDGLIKRFRKVGRLNVLLNSDKGLFQS 417
           +CLL  G  K+L DG+  R R  G +NVLL  D G  +S
Sbjct: 345 ACLLFSGSKKILPDGM--RLR--GDINVLLLGDPGTAKS 379


>SPAC2F3.03c |rpa49|rpa51|DNA-directed RNA polymerase I complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 581 RSVENRVRFRRELVCKSCLLAIGGPKLLLDGLIKRF 474
           RSV NR   R++L           P++L+DGLIKRF
Sbjct: 294 RSVGNRETLRKKLA--------DPPEILIDGLIKRF 321


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  CRCRGVGEVSGVIFT*ITSKNGV 88
           CRC G+ ++SG I   + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 114 KTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDF 293
           K + + ++ + K ++     +D K+ D + +  +  EY  F ++L+   TG+  Y   DF
Sbjct: 108 KCSSDFLEANVKSQFTTCENKDSKE-DYQILHNKRLEYVSFNDELKSLETGQPLYCFQDF 166

Query: 294 E 296
           +
Sbjct: 167 Q 167


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 509 PKLLLDGLIKRF--RKVGRLNVLLNSD 435
           PKL+ D L+ R+  RK+ R + L+ +D
Sbjct: 46  PKLVFDNLVSRYRDRKLSRTSTLVGND 72


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -2

Query: 313 WHWCVYSKSNRPY--LHSPVPPFCRSSRNCSYSALRSPTVSTSICF 182
           W++  Y+ S R Y      VPP+CR         +R+     + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 96  TVSDACKTTYEEIKKDKKHRYV 161
           TV D C   +  IK   KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 93  VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 197
           VT  D  KT  +  +K  KH+ V  YIR  K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 411 FDALKKSLVGVQKYI-QATDLSEAFYEAVQEKLRATDRQ*TGF 536
           F  +   L    K + +   +   F EA+Q+ +RA D   TGF
Sbjct: 828 FTRVSTQLSSAMKSVGEVMSIGRTFEEAIQKAIRAIDYSNTGF 870


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 324 EASKKQKLFLMLWCPDTAKVKKKMLYFSLF 413
           E++ K  +F+ +   + +KVK K+L  SLF
Sbjct: 71  ESATKHSIFVNICVHEPSKVKNKLLNSSLF 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,505
Number of Sequences: 5004
Number of extensions: 43427
Number of successful extensions: 149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)