Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0961
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 104 6e-23
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 104 6e-23
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 73 1e-13
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 73 1e-13
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 71 9e-13
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 2.0
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical pr... 29 2.6
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 104 bits (249), Expect = 6e-23
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 5/152 (3%)
Frame = +3
Query: 81 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 254
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 255 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKS 431
ECRY D E T Q QG S K+ + +CPD A V+++MLY S ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 432 LVGVQK--YIQATDLSEAFYEAVQEKLRATDR 521
L G++ +QA+++S+ ++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 104 bits (249), Expect = 6e-23
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 5/152 (3%)
Frame = +3
Query: 81 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 254
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 255 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKS 431
ECRY D E T Q QG S K+ + +CPD A V+++MLY S ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 432 LVGVQK--YIQATDLSEAFYEAVQEKLRATDR 521
L G++ +QA+++S+ ++V+ L + R
Sbjct: 121 L-GLESLFQVQASEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 73.3 bits (172), Expect = 1e-13
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Frame = +3
Query: 81 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 218
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 219 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKK 389
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 390 KMLYFSLFDALKKSL-VGVQKYIQATDLSEAFYEAVQEKL 506
KM+Y S A+K SL G Q +D SE ++ + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 73.3 bits (172), Expect = 1e-13
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 18/160 (11%)
Frame = +3
Query: 81 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 218
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 219 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKK 389
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 390 KMLYFSLFDALKKSL-VGVQKYIQATDLSEAFYEAVQEKL 506
KM+Y S A+K SL G Q +D SE ++ + KL
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESEMSHKELLNKL 158
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 70.5 bits (165), Expect = 9e-13
Identities = 49/150 (32%), Positives = 81/150 (54%), Gaps = 18/150 (12%)
Frame = +3
Query: 81 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 218
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 219 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKK 389
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 390 KMLYFSLFDALKKSL-VGVQKYIQATDLSE 476
KM+Y S A+K SL G Q +D SE
Sbjct: 119 KMVYASSAAAIKTSLGTGKILQFQVSDESE 148
Score = 39.5 bits (88), Expect = 0.002
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +3
Query: 306 QCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGVQK--YIQATDLSEA 479
Q SE S K+ L+ CPD A V+++MLY S ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 480 FYEAVQEKLRATDR 521
++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 295 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 194
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -2
Query: 295 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 194
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 375 RCPGTTTSEKASVSC*PPTCPGTGACI 295
RC TT ++A V C CP ACI
Sbjct: 320 RCSAGTTCQEALVKCAKAPCPSHAACI 346
>Z98877-4|CAB54473.2| 796|Caenorhabditis elegans Hypothetical
protein Y69H2.3b protein.
Length = 796
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -3
Query: 375 RCPGTTTSEKASVSC*PPTCPGTGACI 295
RC TT ++A V C CP ACI
Sbjct: 385 RCSAGTTCQEALVKCAKAPCPSHAACI 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,890
Number of Sequences: 27780
Number of extensions: 269185
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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