Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0961
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   1.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.3  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   9.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 315 GTSEASKKQKLFLMLWCPDTAKVKKKMLYFSL 410
           G    S   +    +W PDT  V +K  YF +
Sbjct: 79  GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHI 110


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 315 GTSEASKKQKLFLMLWCPDTAKVKKKMLYFSL 410
           G    S   +    +W PDT  V +K  YF +
Sbjct: 79  GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHI 110


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 315 GTSEASKKQKLFLMLWCPDTAKVKKKMLYFSL 410
           G    S   +    +W PDT  V +K  YF +
Sbjct: 18  GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHI 49


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 319 VPWHWCVYSKSNRPYLH 269
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +2

Query: 431 PCRSSEVHSSDRPFGSVL*GRPREASGHRSPINRIYTRARDETEPG 568
           P R + +    +P       RP      R P  R+   A  E EPG
Sbjct: 25  PTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPG 70



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 491 RPREASGHRSPINRIYTRARDETEPG 568
           RP   S  R P  R+   A  E EPG
Sbjct: 101 RPVYISQPRPPHPRLRREAEPEAEPG 126



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 491 RPREASGHRSPINRIYTRARDETEPG 568
           RP   S  R P  R+   A  E EPG
Sbjct: 157 RPVYISQPRPPHPRLRREAEPEAEPG 182


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 571 KTGFGFVASSCVN 533
           +TGFG + S CV+
Sbjct: 45  QTGFGMLESGCVS 57


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 256 PFCRSSRNCSYSALR 212
           P+CR + +C YS  R
Sbjct: 9   PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,223
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)