Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0961
(608 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 110 6e-25
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 107 4e-24
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 105 3e-23
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 102 2e-22
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 102 2e-22
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 101 5e-22
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 101 5e-22
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 100 7e-22
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 99 1e-21
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 97 6e-21
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 93 1e-19
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 87 9e-18
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 82 2e-16
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 73 1e-13
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.45
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 30 1.0
At5g23330.1 68418.m02729 riboflavin biosynthesis protein-related... 29 3.2
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 27 9.7
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 27 9.7
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 110 bits (265), Expect = 6e-25
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 260
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 261 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVG 440
ECRY ++DF++ T+E +K K+F + WCPD AKV+ KM+Y S D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDG 116
Query: 441 VQKYIQATDLSEAFYEAVQEKL 506
+Q +QATD +E + ++ ++
Sbjct: 117 IQVELQATDPTEMDLDVLKSRV 138
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 107 bits (258), Expect = 4e-24
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 260
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 261 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVG 440
ECRY ++DF++ T+E +K K+F + WCPD AKV+ KM+Y S D K+ L G
Sbjct: 62 ADECRYAIYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDG 116
Query: 441 VQKYIQATDLSE 476
+Q +QATD +E
Sbjct: 117 IQVELQATDPTE 128
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 105 bits (251), Expect = 3e-23
Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Frame = +3
Query: 93 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 269
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 270 CRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGVQK 449
CRY ++DF++ T+E +K K+F + WCPD AKV+ KM+Y S D K+ L G+Q
Sbjct: 58 CRYAIYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQV 112
Query: 450 YIQATDLSEAFYEAVQEKL 506
+QATD +E + ++ ++
Sbjct: 113 ELQATDPTEMDLDVLKSRV 131
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 102 bits (245), Expect = 2e-22
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 257
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIPDD 63
Query: 258 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLV 437
ECRY ++DF++T T + +K K+F + W PDT++V+ KMLY S D K+ +
Sbjct: 64 ---ECRYAVYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREME 115
Query: 438 GVQKYIQATDLSEAFYEAVQEKL 506
G+Q +QATD SE + ++ +L
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRL 138
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 102 bits (245), Expect = 2e-22
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 257
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 258 GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLV 437
ECRY ++D+++T T E +K K+F + W PDT++V+ KMLY S D K+ L
Sbjct: 64 ---ECRYAVYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELD 115
Query: 438 GVQKYIQATDLSEAFYEAVQEKL 506
G+Q +QATD SE + ++ ++
Sbjct: 116 GIQVELQATDPSEMSLDIIKGRV 138
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 101 bits (241), Expect = 5e-22
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 260
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 261 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVG 440
ECRY +FDF++ +SE + ++F + W PDTA+V+ KM+Y S D K+ L G
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDG 116
Query: 441 VQKYIQATDLSE 476
+Q +QATD +E
Sbjct: 117 IQVELQATDPTE 128
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 101 bits (241), Expect = 5e-22
Identities = 51/140 (36%), Positives = 83/140 (59%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 263
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLPPN-- 61
Query: 264 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGV 443
ECRY ++DF++T T+E +K K+F + W PD+++V+ KM+Y S D K+ L G+
Sbjct: 62 -ECRYAVYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGI 115
Query: 444 QKYIQATDLSEAFYEAVQEK 503
Q +QATD SE + ++ +
Sbjct: 116 QVELQATDPSEMSLDIIKSR 135
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 100 bits (240), Expect = 7e-22
Identities = 53/140 (37%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Frame = +3
Query: 87 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGT 263
SG+ V+D KTT+ E+++ K HRYVVF I + +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN-- 70
Query: 264 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGV 443
+CRY ++DF++ TSE +K K+F W P T+ ++ K+LY + D L + L G+
Sbjct: 71 -DCRYAVYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGI 124
Query: 444 QKYIQATDLSEAFYEAVQEK 503
IQATD +E E ++E+
Sbjct: 125 HYEIQATDPTEVDLEVLRER 144
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 99 bits (238), Expect = 1e-21
Identities = 53/131 (40%), Positives = 77/131 (58%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 263
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASLP---A 60
Query: 264 GECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGV 443
+CRY ++DF++ T+E +K K+F + W PDTAKV+ KM+Y S D K+ L G+
Sbjct: 61 DDCRYCIYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGI 115
Query: 444 QKYIQATDLSE 476
Q +QATD +E
Sbjct: 116 QVELQATDPTE 126
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 97.5 bits (232), Expect = 6e-21
Identities = 48/137 (35%), Positives = 80/137 (58%)
Frame = +3
Query: 93 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 272
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 273 RYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGVQKY 452
RY +FDF++ T E +K K+F + W PD+++V+ KM+Y S D K+ L G+Q
Sbjct: 57 RYAVFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVE 111
Query: 453 IQATDLSEAFYEAVQEK 503
+QATD SE ++ ++ +
Sbjct: 112 LQATDPSEMSFDIIKSR 128
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/146 (31%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Frame = +3
Query: 78 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQ 251
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y + L
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLP 65
Query: 252 KGGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKS 431
+CRY +FDF++ T + +K K+F + W P+ +K++ K+LY + D L++
Sbjct: 66 ---VDDCRYAVFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRV 117
Query: 432 LVGVQKYIQATDLSEAFYEAVQEKLR 509
L G+ +QATD +E ++ +Q++ +
Sbjct: 118 LEGIHYELQATDPTEMGFDIIQDRAK 143
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 87.0 bits (206), Expect = 9e-18
Identities = 41/138 (29%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Frame = +3
Query: 99 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTGECR 275
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + +CR
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPED---DCR 57
Query: 276 YGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSLVGVQKYI 455
Y +FDF+Y T + + K+F + W P+ +++++KM+Y + L++ L GV +
Sbjct: 58 YAVFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYEL 112
Query: 456 QATDLSEAFYEAVQEKLR 509
QATD +E ++ +Q++ +
Sbjct: 113 QATDPTEMGFDKIQDRAK 130
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 82.2 bits (194), Expect = 2e-16
Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Frame = +3
Query: 93 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETV------GERNAEYEQFLEDLQK 254
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 255 GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLYFSLFDALKKSL 434
ECRY + D E+ ++K+ + W P TAK++KKM+Y S D K+ L
Sbjct: 60 --ADECRYAILDIEFV---------PGERKICFIAWSPSTAKMRKKMIYSSTKDRFKREL 108
Query: 435 VGVQKYIQATDLSEAFYEAVQEKL 506
G+Q ATDL++ +A++ ++
Sbjct: 109 DGIQVEFHATDLTDISLDAIRRRI 132
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 72.9 bits (171), Expect = 1e-13
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Frame = +3
Query: 84 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 260
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 261 TGECRYGLFDFEYTHQCQGTSEASKKQKLFLMLWCPDTAK 380
ECRY +FDF++ +SE + ++F + W PDTA+
Sbjct: 62 ADECRYAIFDFDFV-----SSEGVPRSRIFFVAWSPDTAR 96
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 198 ETVGERNAEYEQFLEDLQKGGTGE 269
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 186 QIDVETVGERNAEYEQFLEDLQKG---GTGECRYGLFDFEYTHQCQGTSEASKKQKLFLM 356
Q++ E +G+ NA + + L KG G + LF+ TH + +K K +
Sbjct: 586 QVNRERIGQSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVE 645
Query: 357 LWCPDTAKVKKKMLYFSLFDAL 422
L PD V K + + A+
Sbjct: 646 LLDPDLEMVDKAVALLANLSAV 667
>At5g23330.1 68418.m02729 riboflavin biosynthesis protein-related
contains weak similarity to Riboflavin biosynthesis
protein ribF. (Swiss-Prot:P08391) [Escherichia coli
O157:H7]
Length = 354
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 579 KCRKPGSVSSRARV*ILFIGD-RWPEASLGRPHKTLPKGRSLECTSE 442
K ++ G VSS L GD R+ LGRPH+ + + R+ + TS+
Sbjct: 237 KSKERGQVSSTRVRHALAAGDVRYVTELLGRPHRVISRTRTQDLTSK 283
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 361 HNIRKSFCFLLASDVPWHWCVYSKSNRPYLHSPVPPFCRSSRNC 230
+ RK FC + VPWH + K ++ P+ R R+C
Sbjct: 271 YKCRKHFC--INCKVPWHSNLSCKEHKSSGREPITTVWRQCRSC 312
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 303 HQCQGTSEASKKQKLFLMLWCPDTAKVKKKMLY 401
HQ +G A KQ F++LW +T +LY
Sbjct: 316 HQSEGGGTAVMKQTFFIVLWVSNTIGFCCALLY 348
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,515
Number of Sequences: 28952
Number of extensions: 243068
Number of successful extensions: 812
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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