Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0959
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine re...    28   1.3  
Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical pr...    27   2.3  
U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical pr...    26   5.3  
Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical ...    26   7.0  

>AC006730-1|AAK72090.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein33 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 25  LHPPLYCLLTNTNILFLVNMNYLL 96
           LH P  C L  T  LFL++ N++L
Sbjct: 301 LHKPARCRLQQTTTLFLISCNHIL 324


>Z93379-9|CAE11301.1|  354|Caenorhabditis elegans Hypothetical
           protein F21H7.14 protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 34  PLYCLLTNTNILFLVNMNYLLTFPNLKVVNALAYFI 141
           P+Y L++NTN L LV   Y+  F     +N LA+F+
Sbjct: 198 PIYILISNTNNLHLVIYVYIPFF----ALNTLAHFL 229


>U23521-7|AAC46811.2|  141|Caenorhabditis elegans Hypothetical
           protein F41C3.4 protein.
          Length = 141

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 162 VKIFTNFSPVLINLICYHLSISLIFYLPDIGRVI 263
           + +F  F P ++NL+     IS I YLP I +V+
Sbjct: 97  IVLFGGFLPGIVNLLRSIPGISTITYLPGIRQVL 130


>U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical
           protein C05D10.3 protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 79  NMNYLLTFPNLKVVNA 126
           NMN++L FPN+ V+ A
Sbjct: 378 NMNFMLQFPNVPVITA 393


>Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical
           protein C15C8.1 protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 315 HYRAN-WVPGPPSSLFFDELLC 253
           H+ A+ W P P S+LFF  LLC
Sbjct: 174 HFIASQWNPLPASALFFTYLLC 195


>AC006645-6|AAF39847.1|  462|Caenorhabditis elegans Hypothetical
           protein F56A4.9 protein.
          Length = 462

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 58  TNILFLVNMNYLLTFPNLKVV 120
           +NI FL N   LL  PNLKV+
Sbjct: 155 SNIYFLRNTVRLLNLPNLKVI 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,332
Number of Sequences: 27780
Number of extensions: 101207
Number of successful extensions: 251
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)