Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0957
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)         28   5.0  
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   28   5.0  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)                    27   8.7  

>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
          Length = 1065

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 394 DITSKVSTTAAPPFKPKLIT 335
           DI  KV+   +PPF+PKL T
Sbjct: 627 DIIEKVTRVESPPFRPKLST 646


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 178 LASWNIPRIMLIILIHKANGKFGTGI*NFTGGRTSCESARV 300
           LA+ N+PR M + +I + N K    I   T     C SAR+
Sbjct: 104 LATANLPRNMAVDMIDRFNPKLAKYISALTAAEELCLSARI 144


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -3

Query: 467  HSPPGVKWLLEPIDIYNANTPPNLRYNF*GLNNG---CSTLQ--TETHYCFTVEMSRV 309
            HS  G  +  E  D Y    P   RY    + +G   CS ++  T+T  C TV+ S+V
Sbjct: 983  HSTHGAAYRTEQCDTYQTGRPDTTRYGI--VRHGVTRCSIVRFDTDTTRCNTVQHSKV 1038


>SB_48010| Best HMM Match : Fz (HMM E-Value=1.1e-15)
          Length = 994

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 192 IPRCQCNKIDDCLYICNLHYNCT 124
           IP+  C+KI+D   + +LHYN T
Sbjct: 167 IPKDVCHKIEDENCVDDLHYNAT 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,884,512
Number of Sequences: 59808
Number of extensions: 318989
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)