Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0955
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    29   0.85 
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   7.9  

>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 562 YKLNHAHTTRYERISEFNFSKRNSFLKAVCFWN 660
           YKLN      Y  IS+  FSK N FL    F N
Sbjct: 289 YKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDN 321


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +2

Query: 173 LTLSK*YACVCASNTNTSNNMYLLCIIKKKY*HSSLLLYIPYK-CGKFHTPPSAQFS*KW 349
           L  SK  A V      T    YLL I  +      LL +  YK  G   T  S  F   W
Sbjct: 171 LRASKACAVVLVEFLATRLGCYLLNISSQSQ-VLDLLAFSGYKFVGLILTSLSKLFEMPW 229

Query: 350 IQSFCFTYIIIYRSSFRLR 406
           +  F F Y+ +  + F LR
Sbjct: 230 VTRFVFLYMYLATAFFLLR 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,702
Number of Sequences: 5004
Number of extensions: 49439
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)