Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0955
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0260 - 1993075-1994312,1996249-1997191                           29   3.6  
02_05_0608 + 30329174-30329362,30329681-30329907,30330035-303301...    29   3.6  
04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834     29   4.7  

>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 373 IREAKTLYPFLRKLRGRRCMKFPTLVGNIE 284
           ++E +    F+R +R R+C +FP   G IE
Sbjct: 653 MKEVEMRLQFVRTIRQRKCQQFPVTEGEIE 682


>02_05_0608 +
           30329174-30329362,30329681-30329907,30330035-30330190,
           30330893-30331078,30331184-30331368,30331571-30331602
          Length = 324

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 271 FFTPSLYSLQVWEISYTSVRAIFVKMDTKFLLHVYNNI*ILFSFANRTASM-SVVLLIHS 447
           F+T S+++LQ WEI     R+ F       + HV + I I  S+  R A + S+VL IH 
Sbjct: 152 FYTYSIFALQFWEIK----RSDF---GISMVHHVVSVILIALSYIFRFARVGSIVLAIHD 204

Query: 448 PS 453
            S
Sbjct: 205 AS 206


>04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834
          Length = 470

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -1

Query: 550 SVLKCFQHRRRHVT*VLTCRASVSLALATLRLVTDYGLVTRHSCSQFYSQTKRGSIY--Y 377
           SV  C +  R +   V+ CR    L   T+  +TD G V  H      S   RG  Y  Y
Sbjct: 259 SVTPCAE--RGYTAVVVRCRDRPKLLFDTVCTITDMGYVIHHGA---VSSEPRGGAYQEY 313

Query: 376 YIR 368
           YIR
Sbjct: 314 YIR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,939,809
Number of Sequences: 37544
Number of extensions: 264802
Number of successful extensions: 530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)