Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0954
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    24   9.4  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    24   9.4  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 136  YLECKEPVS*TTGAGETQVNKVEETIRAVP*SFLQDK 246
            YLE KE +      G+T ++  +E + +V  SFL D+
Sbjct: 1525 YLELKESLPGVLQNGQTDLDPSKEQMSSVIVSFLLDE 1561


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 239 WRKLYGTARIVSSTLLTCVSPA 174
           W K+   A++VSS L T + PA
Sbjct: 103 WNKITAKAKVVSSLLGTKILPA 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,477
Number of Sequences: 5004
Number of extensions: 18068
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)