Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0954
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  27   6.9  

>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 135 RTHSCFEQKKILQKKKNNTPLHFTALAQNKFEFFIFFR 22
           +T S  ++++I QK++   PL+   L Q    F  FF+
Sbjct: 307 KTLSTQQRERIFQKQQTQNPLYLKTLLQELLSFGEFFQ 344


>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 183 FTSAGRLTHWLFAFQI---RTHSCFEQKKILQKKKNNTPLHFTALAQNK 46
           FT+ G   H++F+F +   R   CF  K IL    N   +HF  ++ N+
Sbjct: 386 FTTQGMSQHYIFSFSVICSRKLPCFLWKIILFTDSN---MHFRNISDNR 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,522,024
Number of Sequences: 59808
Number of extensions: 129383
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)