Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0953
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22RW1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q16ZB3 Cluster: Thyroid hormone receptor-associated pro...    34   3.4  
UniRef50_P43311 Cluster: Polyphenol oxidase, chloroplast precurs...    34   4.6  

>UniRef50_Q22RW1 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1174

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 474 ICVNIWYHQYFSHKYCQKSVV*F*FCF*FTYVLTTIN--KINTYFYLNLKDR*CN 316
           +CVN    QY SH YCQKS +     F   +++ ++N  K+  +F  N +D  CN
Sbjct: 375 LCVNNQSPQYLSHIYCQKSCM-KNIDFAVVFIINSVNDSKLYKFFAQNYQDLVCN 428


>UniRef50_Q16ZB3 Cluster: Thyroid hormone receptor-associated
           protein; n=1; Aedes aegypti|Rep: Thyroid hormone
           receptor-associated protein - Aedes aegypti (Yellowfever
           mosquito)
          Length = 2291

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -2

Query: 748 KCYVPVNLFYITIFVSSIKYL*RFYFCYPCKHTTHLMVSGYRRS*MSTMPGSA*VPMKLS 569
           K YVP+ + Y++ FV S ++  R  +   CK   HL+      S + T  GS   P    
Sbjct: 321 KIYVPLAMQYLSDFVQSERFSRRLAYAV-CKKLAHLINKMSTESDIKTEDGSRENPFDSI 379

Query: 568 FHFYTSC 548
           F  Y SC
Sbjct: 380 FSEYMSC 386


>UniRef50_P43311 Cluster: Polyphenol oxidase, chloroplast precursor;
           n=48; Magnoliophyta|Rep: Polyphenol oxidase, chloroplast
           precursor - Vitis vinifera (Grape)
          Length = 607

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 752 WKVLCPGKSFLYYNFR*FYKIFIKVLFLLPL*AYDPPDGEWLPSL 618
           W  L   + +LY+N R   K+     F LP  A+D PDG ++P++
Sbjct: 214 WLFLPFHRYYLYFNERILAKLIDDPTFALPYWAWDNPDGMYMPTI 258


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,460,409
Number of Sequences: 1657284
Number of extensions: 11298424
Number of successful extensions: 21168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21148
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)