Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0953
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    28   1.7  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   4.0  
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p...    25   9.2  

>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 445 FFS*ILSKERSLVLVLFLIYLCFDY 371
           FF  ++  +R++ L +FL+YL F+Y
Sbjct: 361 FFHYLIDTDRAIDLFIFLLYLSFEY 385


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 498 TKIFEVELICVNIWYHQYFSH 436
           T ++++  +C+  W+H  FSH
Sbjct: 149 TLVYDIYTLCLVSWHHHVFSH 169


>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 85

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 563 MKRQFHRNLS*TWHC 607
           +KR+F +  S TWHC
Sbjct: 38  IKREFDKKFSPTWHC 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,725
Number of Sequences: 5004
Number of extensions: 53001
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)