Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0953
(776 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L25941-1|AAA59495.1| 615|Homo sapiens integral nuclear envelope... 31 4.6
L25931-1|AAA59494.1| 615|Homo sapiens lamin B receptor protein. 31 4.6
BC020079-1|AAH20079.1| 615|Homo sapiens lamin B receptor protein. 31 4.6
AK222834-1|BAD96554.1| 615|Homo sapiens lamin B receptor varian... 31 4.6
AB209514-1|BAD92751.1| 616|Homo sapiens lamin B receptor varian... 31 4.6
BC038353-1|AAH38353.1| 391|Homo sapiens TM7SF2 protein protein. 30 8.1
BC012857-1|AAH12857.1| 418|Homo sapiens transmembrane 7 superfa... 30 8.1
BC009052-1|AAH09052.1| 418|Homo sapiens transmembrane 7 superfa... 30 8.1
AF096304-1|AAD09765.1| 418|Homo sapiens putative sterol reducta... 30 8.1
AF096303-1|AAD09769.1| 418|Homo sapiens putative sterol reducta... 30 8.1
AF048704-1|AAC21457.1| 589|Homo sapiens lamin B receptor homolo... 30 8.1
AF023676-1|AAC21450.1| 589|Homo sapiens lamin B receptor homolo... 30 8.1
>L25941-1|AAA59495.1| 615|Homo sapiens integral nuclear envelope
inner membrane protein protein.
Length = 615
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W NHI F+I++FT ++
Sbjct: 547 NYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLV 581
>L25931-1|AAA59494.1| 615|Homo sapiens lamin B receptor protein.
Length = 615
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W NHI F+I++FT ++
Sbjct: 547 NYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLV 581
>BC020079-1|AAH20079.1| 615|Homo sapiens lamin B receptor protein.
Length = 615
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W NHI F+I++FT ++
Sbjct: 547 NYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLV 581
>AK222834-1|BAD96554.1| 615|Homo sapiens lamin B receptor variant
protein.
Length = 615
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W NHI F+I++FT ++
Sbjct: 547 NYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLV 581
>AB209514-1|BAD92751.1| 616|Homo sapiens lamin B receptor variant
protein.
Length = 616
Score = 31.1 bits (67), Expect = 4.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W NHI F+I++FT ++
Sbjct: 548 NYLGDLIMALAWSLPCGFNHILPYFYIIYFTMLLV 582
>BC038353-1|AAH38353.1| 391|Homo sapiens TM7SF2 protein protein.
Length = 391
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 323 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 357
>BC012857-1|AAH12857.1| 418|Homo sapiens transmembrane 7
superfamily member 2 protein.
Length = 418
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 350 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 384
>BC009052-1|AAH09052.1| 418|Homo sapiens transmembrane 7
superfamily member 2 protein.
Length = 418
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 350 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 384
>AF096304-1|AAD09765.1| 418|Homo sapiens putative sterol reductase
SR-1 protein.
Length = 418
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 350 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 384
>AF096303-1|AAD09769.1| 418|Homo sapiens putative sterol reductase
SR-1 protein.
Length = 418
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 350 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 384
>AF048704-1|AAC21457.1| 589|Homo sapiens lamin B receptor homolog
TM7SF2 protein.
Length = 589
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 484 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 518
>AF023676-1|AAC21450.1| 589|Homo sapiens lamin B receptor homolog
TM7SF2 protein.
Length = 589
Score = 30.3 bits (65), Expect = 8.1
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +3
Query: 222 NFTGECFKGLTWRNIFNINHIFATFFILFFTSYII 326
N+ G+ L W ++H+ F++L+FT+ ++
Sbjct: 484 NYLGDLIMALAWSLPCGVSHLLPYFYLLYFTALLV 518
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,812,895
Number of Sequences: 237096
Number of extensions: 1659247
Number of successful extensions: 5561
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5561
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -