Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0953
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    29   4.9  
AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical ...    28   8.6  

>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +1

Query: 364 VNSSQNIGKLKTKLKLNYALLTVFMRKILVIPNVY 468
           +++S+N   L  ++ LNY + +++ RK+ + PN +
Sbjct: 167 LDNSKNGTDLSERISLNYPITSIYSRKMSIQPNFF 201


>AF016415-3|AAW88418.1|  658|Caenorhabditis elegans Hypothetical
           protein C02A12.8 protein.
          Length = 658

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = -1

Query: 725 FLYYNFR*FYKIFIKVLFLLPL*AYDPPDGEWLPSLINVNNARFSLGSYEIVFSFLYFMF 546
           F Y  FR    ++   +FL+ +  +     +WLP ++  NN R+S+ S  ++ + L    
Sbjct: 62  FYYRRFRRILPLYYLTIFLIVVMVH-----QWLPYILWDNNYRYSIASLLLITNQLVIHD 116

Query: 545 QGNLHLAF 522
           Q +   +F
Sbjct: 117 QADYFNSF 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,020
Number of Sequences: 27780
Number of extensions: 289799
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)