Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0953
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.45 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   0.60 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 647 PPDGEWLPSLINVNNARFSLGSYEI 573
           PPD  W P ++  NNA    G+YE+
Sbjct: 104 PPDKVWKPDIVLFNNAD---GNYEV 125


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 653 YDPPDGEWLPSLINVNNARFSLGSYEI 573
           Y P +  WLP ++  NNA    G+YE+
Sbjct: 109 YVPSENIWLPDIVLYNNAD---GNYEV 132


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 653 YDPPDGEWLPSLINVNNARFSLGSYEIVFSFLYF 552
           Y P +  WLP ++  NNA    G   +  + L++
Sbjct: 96  YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHY 129


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 647 PPDGEWLPSLINVNNARFSLGSYEI 573
           P +  WLP ++  NNA    G+YE+
Sbjct: 98  PSEHIWLPDIVLYNNAD---GNYEV 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 742  YVPVNLFYITIFVSSIKYL*RF 677
            Y P+N F+ T+  +S+K   RF
Sbjct: 1536 YRPINEFHWTLVSNSVKMQRRF 1557


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 742  YVPVNLFYITIFVSSIKYL*RF 677
            Y P+N F+ T+  +S+K   RF
Sbjct: 1532 YRPINEFHWTLVSNSVKMQRRF 1553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,801
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)