Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0952
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 40 6e-05
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 28 0.37
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p... 26 1.1
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 2.6
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 2.6
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 3.4
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 3.4
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 24 4.5
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 24 4.5
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 24 4.5
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 24 5.9
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 5.9
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 23 7.9
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 23 7.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 7.9
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 40.3 bits (90), Expect = 6e-05
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = +2
Query: 65 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTR 244
SGV VS C ++E+K K RYVVF + D K V + +++ FL DL + R
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCR 63
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 27.9 bits (59), Expect = 0.37
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 152 RDEKQIDVETVGERNAEYEQFLEDLQKGGTRGMQI 256
RD+KQ DVE + E +A+ + + GG+ G +
Sbjct: 277 RDQKQQDVEALQEYSAKLSLERDKISSGGSNGFSL 311
>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 205
Score = 26.2 bits (55), Expect = 1.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 119 DKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLE-DLQKGGTRGMQI 256
D+K + Y++D + +E + ER E L + GG G Q+
Sbjct: 90 DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTVDGGGCHGYQV 136
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 2.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 74 TVSDACKTTYEEIKKDKKHRYV 139
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 2.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 175
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 24.6 bits (51), Expect = 3.4
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 92 KTTYEEIKKDKKH-RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQK 232
K TY + KK ++ R ++ + + + + + +YE FL++L++
Sbjct: 399 KKTYPQTKKKNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQNLEE 446
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 3.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -2
Query: 249 IPRVPPFCRSSRNCSYSALRSPTVSTS 169
+P++PP+ ++ +N S + P V+TS
Sbjct: 219 LPKIPPYVKTKKNGS-KVIVDPVVTTS 244
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 4.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -1
Query: 295 PGTGGCIQSQNRPYL 251
P TGGC+ + +PY+
Sbjct: 427 PATGGCLYTNPKPYV 441
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 4.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 125 KHRYVVFYIRDEKQIDVETVGE 190
KH + F++R K D+ T+GE
Sbjct: 236 KHAPIEFWLRMSKAADIFTIGE 257
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 4.5
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = -1
Query: 208 FVFGVAFANRLDV 170
F+FG+AFAN L++
Sbjct: 10 FLFGIAFANNLNI 22
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 23.8 bits (49), Expect = 5.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 239 TRGMQIWPVLTLNTPTSAR 295
T +QIW + +NTP + R
Sbjct: 1883 TPAIQIWKAIVVNTPRTVR 1901
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 77 VSDACKTTYEEIKKDKKHRYV 139
V D KT YE+++KD R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 92 KTTYEEI-KKDKKHRYVVFYIRDEKQIDVET 181
K Y++I +K+ + Y+++EKQID+ T
Sbjct: 4 KINYKDITQKEMFNEIFKEYVKEEKQIDLGT 34
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKK 118
A+ + +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.4 bits (48), Expect = 7.9
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 155 DEKQID--VETVGERNAEYEQFLEDLQKGGTR 244
D+K+I V + ERNA+ LED+Q T+
Sbjct: 2016 DKKRIQSSVSRLEERNAQLRNQLEDVQASETQ 2047
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,169,505
Number of Sequences: 5004
Number of extensions: 18863
Number of successful extensions: 73
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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