Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0952
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0479 + 34217170-34217172,34217337-34217786 52 1e-07
03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203... 51 2e-07
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 51 2e-07
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393 42 1e-04
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318 41 2e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928... 41 2e-04
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378 39 0.001
05_01_0103 + 686770-687017,687120-687270 38 0.002
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084 35 0.015
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 31 0.18
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895... 30 0.43
04_03_0226 - 12977443-12977895 29 0.74
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 27 3.0
11_01_0805 - 7166265-7166759 27 4.0
03_05_1166 - 30876802-30876899,30877233-30878685 26 5.2
02_01_0497 + 3607227-3607462,3607600-3607661,3608138-3608286,360... 26 5.2
07_01_0986 - 8314733-8314783,8315895-8318381 26 6.9
05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559 26 6.9
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 26 6.9
03_02_0403 + 8160664-8163690 26 6.9
01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625 26 6.9
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 25 9.2
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 25 9.2
03_06_0745 + 35937173-35938256,35938994-35939721 25 9.2
02_04_0393 - 22581651-22582046,22582191-22582196 25 9.2
>03_06_0479 + 34217170-34217172,34217337-34217786
Length = 150
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGT 241
SGV VS+ CK ++E++ + HR+VVF I D +Q+ V+ VG R+A +++ L G
Sbjct: 6 SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADGC 65
Query: 242 R 244
R
Sbjct: 66 R 66
>03_06_0480 +
34218403-34218405,34219071-34219127,34220047-34220312,
34220402-34220552
Length = 158
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 238
+SGV + D CK + E++ + HR++ F + ++ K+I V+ +G+R YE F L +G
Sbjct: 24 SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEGD 83
Query: 239 TR 244
R
Sbjct: 84 CR 85
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 238
+SG+ V+ CK T+ E+++ K HRYV+F I D+ K++ VE G ++ F++ L +
Sbjct: 11 SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESD 70
Query: 239 TR 244
R
Sbjct: 71 CR 72
>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
Length = 158
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 214
ASG+ V D CK + E+K + R++VF I ++ +Q+ V+ +G+ Y+ F
Sbjct: 24 ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75
>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
Length = 145
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 68 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 226
G+ V+D CK ++E+K + R++VF I D+ +I VE +G+ YE F L
Sbjct: 13 GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATL 66
>04_04_0752 -
27791126-27791167,27791792-27791863,27792771-27792855,
27792971-27793236,27794117-27794301,27794925-27795018,
27795193-27795284,27795401-27795539,27796101-27796385
Length = 419
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 214
ASG+ V D CK ++E+K + R++ F I + +Q+ V+ +G+ Y+ F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320
>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
Length = 153
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 226
+ V + K+ + E+K+ K HRYV+F I D + +I VE G Y+ F L
Sbjct: 20 IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASL 72
>05_01_0103 + 686770-687017,687120-687270
Length = 132
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDL 226
+ V D CK + E+K + +R++++ I ++K+ + VE VGE Y+ F L
Sbjct: 1 MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 53
>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
Length = 169
Score = 34.7 bits (76), Expect = 0.015
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 226
+ V + K+ + E+ + K HRYV+F I D + +I VE G Y+ F L
Sbjct: 40 IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 191 RNAEYEQFLEDLQKGGTRGMQIWPVLTLNTPTSARAR 301
+ A +EQFL+D +GG R + P T++ AR R
Sbjct: 553 KQARFEQFLKDKYQGGLRPANLIPTSTMSDVDRARER 589
>03_05_1112 +
30488678-30488806,30489047-30489228,30489310-30489505,
30490095-30491117
Length = 509
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 98 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTRGMQ 253
T +++ +D+ + ++ EK D E + E NA YE+ + L+ G G+Q
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVGGIQ 190
>04_03_0226 - 12977443-12977895
Length = 150
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 149 IRDEKQIDVETVGERNAEYEQFLEDLQKGGTRG 247
+R+E +D+E G AE E+ DL+ GG G
Sbjct: 112 MREEAAVDLEPGGGGGAEEEEAAVDLEPGGVEG 144
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 134 NDASCPS*SPRKWSCKRPKLSHQTPFFDVIHVKITPLTSPTPRQ 3
++ S P +P K +PKL ++P + + + P TSPT Q
Sbjct: 161 SEDSTPKETPPKAEETKPKLEEKSPKAEPPKMPLPPKTSPTEPQ 204
>11_01_0805 - 7166265-7166759
Length = 164
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 304 PTCPGTGGCIQSQNRPYLHSPGTALLQILEELFV 203
P C G G C+Q+ SP +A + EE+ V
Sbjct: 91 PWCSGAGQCVQNMQDELPPSPTSASSTLAEEVVV 124
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 119 PS*SPRKWSCKRPKLSHQTPFFDVIHVKIT 30
P+ S W ++P+ S +TP HVK T
Sbjct: 237 PNPSGEPWHTRKPRFSKETPASFCHHVKFT 266
>02_01_0497 +
3607227-3607462,3607600-3607661,3608138-3608286,
3608418-3608538,3608638-3608793,3609041-3609086,
3609414-3609480,3609553-3609629,3610180-3610249,
3610956-3611014,3611105-3611213,3611552-3611611,
3611701-3611763,3612007-3612131,3612260-3612422,
3612506-3612565,3612802-3612860,3613057-3613138,
3613227-3613290,3613506-3613573,3613648-3613758
Length = 668
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 246 PRVPPFCRSSRNCSYSALRSPT 181
P PPF RS + S SA R PT
Sbjct: 338 PAAPPFSRSPSSRSSSASRQPT 359
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 259 PYLHSPGTALLQILEELFVFGVAFANR 179
P+LH AL ++LEE+ V G N+
Sbjct: 119 PFLHHDLAALEKVLEEMAVLGYGLPNQ 145
>05_07_0201 + 28377250-28377515,28377588-28377852,28377927-28378559
Length = 387
Score = 25.8 bits (54), Expect = 6.9
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = -1
Query: 307 PPTCP----GTGGCIQSQNRPYLHSPGTALLQILEELFVFGVAFANRLDVDLFLVTDVED 140
PP P GT I + PYL PG L+ E ++ GVA A + F + VE
Sbjct: 278 PPAPPYHGVGTELAIDTGESPYLRRPGNELVWHNLECYLHGVAGARGGEAGRFKLA-VER 336
Query: 139 NVTM 128
+V +
Sbjct: 337 DVAL 340
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 25.8 bits (54), Expect = 6.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 101 KWSCKRPKLSHQTP 60
+W C RPK H TP
Sbjct: 56 EWQCARPKTRHPTP 69
>03_02_0403 + 8160664-8163690
Length = 1008
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 74 TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLE 220
T SDA E+ + +HR+ ++I + Q +V E+ A +F E
Sbjct: 425 TYSDAVAEAVAEVLPNARHRFCFWHILKKLQENVGRTNEKEAISLRFKE 473
>01_06_0616 + 30640887-30642314,30642410-30642520,30642587-30642625
Length = 525
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 IRDEKQIDVETVGERNAEYEQFLEDLQKGGTRGMQ-IWPVLTLNT 280
++D ++ G +A + +FLEDL +RGM I VL+ NT
Sbjct: 443 VKDAAAQAIKEGGSSHAAFFKFLEDLPLQVSRGMDWIMDVLSDNT 487
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 286 GGCIQSQNRPYLH 248
GGC + QN PYLH
Sbjct: 385 GGCRRGQNCPYLH 397
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 309 SLRRALALVGVFKVKTGHICIPRVPPFCRSSRNCSYSA 196
+LRRA AL G + IP PP R+C++ A
Sbjct: 272 ALRRARALYG--PITDLLALIPHAPPLAAPHRDCAFDA 307
>03_06_0745 + 35937173-35938256,35938994-35939721
Length = 603
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 195 TPNTNSSSRICRRAVPGECRY 257
TP+TN +S I + PG+C++
Sbjct: 483 TPSTNFNSLIWKAWAPGKCKF 503
>02_04_0393 - 22581651-22582046,22582191-22582196
Length = 133
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFY 148
V VSDA K EE KK ++ +V+Y
Sbjct: 69 VEVSDASKKKEEEAKKKEEKEELVYY 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,017,095
Number of Sequences: 37544
Number of extensions: 135722
Number of successful extensions: 495
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -