Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0952
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.25 
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             28   1.8  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6)           26   5.4  
SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  26   7.2  
SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_12510| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
 Frame = +2

Query: 65  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 211
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 212 FLEDLQKGGTR 244
            LE L     R
Sbjct: 64  MLEKLSDSEPR 74


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 104  EEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTRGMQIWPVLTLN 277
            +++ +D+        I DE + D+ T   RN E  + ++  +K   RG+ ++PV  ++
Sbjct: 1837 DDLARDECLSEETISIPDETRPDLSTYRTRNVEERKAIKKTKKRRGRGLGLFPVTAVS 1894


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 175
           SG+ V D      + +K  K H+Y +F I DE  + V
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVV 40


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +2

Query: 53  QKMASGVTVSDACKTTYEEIKKD--KKHRYVVFYIRDEKQIDVETVG--ERNAEYEQFLE 220
           QK    V   D  + + +E  KD  KK +Y+ +   DE+  D + +   +   EY+ + E
Sbjct: 287 QKKDDSVKDEDEEEESEQEEDKDEEKKVKYLTYESSDEQMYDTDDLNDDDTRGEYDDYEE 346

Query: 221 DLQK 232
            L+K
Sbjct: 347 MLRK 350


>SB_28664| Best HMM Match : Antimicrobial_1 (HMM E-Value=2.6)
          Length = 92

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 231 FCRSSRNCSYSALRSPTVSTSICFSSRM 148
           FCR ++ C   ALRS T + +    +RM
Sbjct: 65  FCRFTKGCRQPALRSATTTPATTRQARM 92


>SB_45671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 277 IQSQNRPYLHSPGTALLQILEEL 209
           +QS  RP+ HS GTALL++  ++
Sbjct: 217 LQSAYRPF-HSTGTALLRVFNDI 238


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 158 EKQIDVETVGERNAEYEQFLEDLQKGG 238
           +KQ  +E+V ERN++ E+ L+D +  G
Sbjct: 151 DKQTMLESVHERNSDLERRLQDCKLSG 177


>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 68  GVTV--SDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 175
           G+T+  +D C++     KKD K R +V + R   +++V
Sbjct: 269 GITILPTDICRSHRTGKKKDSKPRQIVKFTRHNTKLEV 306


>SB_12510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 264 TGHICIPRVPPFCRSSRNCSYSALRSP 184
           +GH+C+P  PP  R SR   Y+  R P
Sbjct: 55  SGHLCLPEFPP--RVSRG-FYACARDP 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,429
Number of Sequences: 59808
Number of extensions: 165241
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)