Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0952
         (310 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK074698-1|BAC11145.1|  627|Homo sapiens protein ( Homo sapiens ...    34   0.098
AF195951-1|AAF24308.1|  619|Homo sapiens signal recognition part...    34   0.098
AY732489-1|AAV33128.1|  482|Homo sapiens zinc finger MYND domain...    31   0.91 
X81789-1|CAA57388.1|  501|Homo sapiens splicing factor SF3a60 pr...    29   2.8  
AK097463-1|BAC05064.1|  209|Homo sapiens protein ( Homo sapiens ...    29   3.7  
AB209132-1|BAD92369.1|  547|Homo sapiens structure specific reco...    27   8.5  

>AK074698-1|BAC11145.1|  627|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
           SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
          Length = 627

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +2

Query: 38  LRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQID------VETVGERNA 199
           LR  HQ+  + +   + CKT YE++         V Y +  ++I          +G+++A
Sbjct: 197 LRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA 256

Query: 200 EYEQFLEDLQKGGTRGMQIWPVLTLNTPTSAR 295
             E     L+ GGT G+    +  L T T A+
Sbjct: 257 INELMQMRLRSGGTEGLLAEKLEALITQTRAK 288


>AF195951-1|AAF24308.1|  619|Homo sapiens signal recognition
           particle 68 protein.
          Length = 619

 Score = 33.9 bits (74), Expect = 0.098
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +2

Query: 38  LRE*HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQID------VETVGERNA 199
           LR  HQ+  + +   + CKT YE++         V Y +  ++I          +G+++A
Sbjct: 189 LRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA 248

Query: 200 EYEQFLEDLQKGGTRGMQIWPVLTLNTPTSAR 295
             E     L+ GGT G+    +  L T T A+
Sbjct: 249 INELMQMRLRSGGTEGLLAEKLEALITQTRAK 280


>AY732489-1|AAV33128.1|  482|Homo sapiens zinc finger MYND domain
           containing 11 transcript variant 3 protein.
          Length = 482

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +2

Query: 77  VSDACKTTYEEIKKDKK---HRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTRG 247
           V++    +YEE K D +   H  V+FY  D +Q D+  +  ++  +E    +L     +G
Sbjct: 111 VNEGKYRSYEEFKADAQLLLHNTVIFYGTDSEQADIARMLYKDTCHEIPNHELVWAKMKG 170

Query: 248 MQIWP 262
              WP
Sbjct: 171 FGFWP 175


>X81789-1|CAA57388.1|  501|Homo sapiens splicing factor SF3a60
           protein.
          Length = 501

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 89  CKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 226
           C   Y  +K  +K  Y+ +    ++  D+   G +NAEY+++LE L
Sbjct: 145 CYLKYINLKASEKLDYITYLSIFDQLFDIPK-GRKNAEYKRYLEML 189


>AK097463-1|BAC05064.1|  209|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40144 fis, clone TESTI2013012. ).
          Length = 209

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 261 GHICIPRVPPFCRSSRNCSYSALRSPTVST 172
           GH+C P  P    S   C+Y+ + +P +++
Sbjct: 170 GHLCFPHWPQLLDSRDCCTYTCINTPVLNS 199


>AB209132-1|BAD92369.1|  547|Homo sapiens structure specific
           recognition protein 1 variant protein.
          Length = 547

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 304 PTCPGTGGCIQSQNRPYLHSPGTAL 230
           P C   GGC     R +LH PG A+
Sbjct: 516 PECVVKGGCNPGHGRCHLHLPGAAV 540


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,755,866
Number of Sequences: 237096
Number of extensions: 727143
Number of successful extensions: 2232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)