Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0952
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 57 3e-09
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 57 3e-09
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 31 0.12
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 31 0.12
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 31 0.12
Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical pr... 25 8.1
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 25 8.1
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 25 8.1
AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear recep... 25 8.1
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +2
Query: 59 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 232
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +2
Query: 59 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 232
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 178
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 178
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 178
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>Z77132-4|CAB00862.3| 536|Caenorhabditis elegans Hypothetical
protein F54D1.4 protein.
Length = 536
Score = 25.4 bits (53), Expect = 8.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 KMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNA-EYEQFLEDLQK 232
K+ GV CK + KD +++YV R EK +V T ERNA Y +F + L
Sbjct: 18 KIHYGVLACFGCKGFFRRAVKDGRNKYV---CRFEKNCEV-TKFERNACRYCRFRKCLLV 73
Query: 233 G 235
G
Sbjct: 74 G 74
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +2
Query: 50 HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQ 229
H+++ S T + CKT+ +++ + + + Q + + NAE+E L DL+
Sbjct: 475 HEEVMSATTALE-CKTSGQDVASIRLRDKSRERVEKKYQENQWNLLSTNAEWETLLNDLE 533
Query: 230 KGGTRGMQIWPVLTLNTPTSA 292
T + + + SA
Sbjct: 534 DSVTIAQSVQDSMAFSVKASA 554
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/81 (20%), Positives = 35/81 (43%)
Frame = +2
Query: 50 HQKMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQ 229
H+++ S T + CKT+ +++ + + + Q + + NAE+E L DL+
Sbjct: 5321 HEEVMSATTALE-CKTSGQDVASIRLRDKSRERVEKKYQENQWNLLSTNAEWETLLNDLE 5379
Query: 230 KGGTRGMQIWPVLTLNTPTSA 292
T + + + SA
Sbjct: 5380 DSVTIAQSVQDSMAFSVKASA 5400
>AF083225-1|AAD03683.1| 536|Caenorhabditis elegans nuclear receptor
NHR-7 protein.
Length = 536
Score = 25.4 bits (53), Expect = 8.1
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 56 KMASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNA-EYEQFLEDLQK 232
K+ GV CK + KD +++YV R EK +V T ERNA Y +F + L
Sbjct: 18 KIHYGVLACFGCKGFFRRAVKDGRNKYV---CRFEKNCEV-TKFERNACRYCRFRKCLLV 73
Query: 233 G 235
G
Sbjct: 74 G 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,726,217
Number of Sequences: 27780
Number of extensions: 114388
Number of successful extensions: 427
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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