Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0952
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   1.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   1.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    20   5.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   5.9  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 246 PRVPPFCRSSRNCSYSALR 190
           P+  P+CR + +C YS  R
Sbjct: 5   PQECPYCRRNFSCYYSLKR 23


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -3

Query: 293 WHWWVYSKSKQAISAFPGYRPSA 225
           W  W +    + +  FP  RP A
Sbjct: 862 WRHWKFPNLVEVLDEFPSVRPFA 884


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +2

Query: 86  ACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGER 193
           +C        K+K  RY   Y   EK ++  T  +R
Sbjct: 3   SCSKDRNREYKEKDRRYEKLYNEKEKLLEERTSRKR 38


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -2

Query: 258 HICIPRVPPFCRSSRNCSYSALRSP 184
           ++C+  V  FC  ++   Y   R+P
Sbjct: 131 NLCMISVDRFCAITKPLKYGVKRTP 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,462
Number of Sequences: 438
Number of extensions: 1372
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)