Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0952
(310 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 50 4e-07
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 49 6e-07
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 48 1e-06
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 46 7e-06
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 46 7e-06
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 44 2e-05
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 44 2e-05
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 44 3e-05
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 44 3e-05
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 43 4e-05
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 41 1e-04
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 39 6e-04
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 38 0.001
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 37 0.003
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 27 1.9
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot... 27 3.4
At4g24790.1 68417.m03550 expressed protein ; expression supporte... 26 4.5
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 26 4.5
At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containi... 26 5.9
At5g52330.1 68418.m06494 meprin and TRAF homology domain-contain... 25 7.8
At5g42810.1 68418.m05214 expressed protein similar to unknown pr... 25 7.8
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 25 7.8
At4g17120.1 68417.m02578 expressed protein 25 7.8
At4g12330.1 68417.m01951 cytochrome P450 family protein contains... 25 7.8
At2g30900.1 68415.m03766 expressed protein 25 7.8
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQKGGT 241
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDC 72
Query: 242 R 244
R
Sbjct: 73 R 73
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 49.2 bits (112), Expect = 6e-07
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDL 226
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 60
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQF 214
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEF 56
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDL 226
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASL 60
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDL 226
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASL 60
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 44.0 bits (99), Expect = 2e-05
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 226
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASL 58
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 235
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPED 63
Query: 236 GTR 244
R
Sbjct: 64 ECR 66
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 43.6 bits (98), Expect = 3e-05
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDL 226
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASL 53
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQF 214
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDF 54
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 62 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDL 226
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSI 60
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +2
Query: 56 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLED 223
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y LED
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHD-LED 62
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 39.1 bits (87), Expect = 6e-04
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 226
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASL 51
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 77 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGGTR 244
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L + R
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASLPEDDCR 57
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = +2
Query: 71 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDL 226
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSL 58
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 176 ETVGERNAEYEQFLEDLQKGG 238
ET G+ +EYE+F E+ ++GG
Sbjct: 45 ETDGDSTSEYEEFEEEKERGG 65
>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family protein
contains Pfam PF04073: YbaK / prolyl-tRNA synthetases
associated domain; similar to 25.7 kDa protein
(GI:7271117) [Cicer arietinum]
Length = 307
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 116 KDKKHRYVVFYIRDEKQIDVETVGER 193
KDKKHRY + + ++D++ + +R
Sbjct: 51 KDKKHRYYIVSAMVDTKVDMKVLSQR 76
>At4g24790.1 68417.m03550 expressed protein ; expression supported
by MPSS
Length = 815
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 267 KTGHICIPRVPPFCRSSRNCSYSALRSPTVSTSICFSSRM 148
+T C P S R+C + LR+ +V +S SSRM
Sbjct: 752 RTDSDCASEKPAVTNSLRSCQGNVLRARSVRSSANASSRM 791
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 249 IPRVPPFCRSSRNCSYSALRSPTVSTSICFSS 154
+PR+P S +C S + P + +CFSS
Sbjct: 272 LPRLPGSVLSFEDCDISGVLVPWLYVGMCFSS 303
>At1g74750.1 68414.m08661 pentatricopeptide (PPR) repeat-containing
protein low similarity to post-transcriptional control
of chloroplast gene expression CRP1 [Zea mays]
GI:3289002; contains Pfam profile PF01535: PPR repeat
Length = 855
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 41 VKITPLTSPTPRQ 3
+K+TP T+PTPRQ
Sbjct: 277 MKVTPRTAPTPRQ 289
>At5g52330.1 68418.m06494 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 397
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 125 KHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTRGM 250
K V Y R+ +QI + V ER ++ E+ +ED K + G+
Sbjct: 159 KTEIVRVYFRNIEQIFLRFVEERRSKLEKLIEDKAKWTSFGV 200
>At5g42810.1 68418.m05214 expressed protein similar to unknown
protein (pir||T26506)
Length = 451
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 104 EEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTRGMQIWPVLTLNTP 283
+E+ + + + V+ + K +D G R + ++FLE + K T+ +W V N
Sbjct: 81 KEVLEQRYVKNVIIPLLGPKHVDA---GVRVSVSKEFLECVDKKVTKQRPLWRVNAANVD 137
Query: 284 TS 289
TS
Sbjct: 138 TS 139
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 198 PNTNSSSRICRRAVPGECRYG 260
P +N ++IC R G C YG
Sbjct: 202 PGSNYKTKICDRYSKGNCTYG 222
>At4g17120.1 68417.m02578 expressed protein
Length = 1661
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 1 RCRGVGEVSGVIFT*ITSKNGVWCDSFGR 87
R G+GE S V+ +T++N W D +G+
Sbjct: 1173 RQSGLGEDSWVLLEPLTTENFAWEDPYGQ 1201
>At4g12330.1 68417.m01951 cytochrome P450 family protein contains
Pfam profile:PF00067 cytochrome p450
Length = 518
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 305 SDVPWHWWVYSKSKQAISAFP 243
S V W+ WVY KSK+ P
Sbjct: 27 SSVFWYIWVYVKSKRLFPPLP 47
>At2g30900.1 68415.m03766 expressed protein
Length = 367
Score = 25.4 bits (53), Expect = 7.8
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -3
Query: 293 WHWWVYSKSKQ 261
WHWW+++ KQ
Sbjct: 203 WHWWLHTDRKQ 213
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,287,578
Number of Sequences: 28952
Number of extensions: 104519
Number of successful extensions: 425
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -