Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0951
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   1.4  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   1.9  
SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    25   4.3  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   5.7  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   5.7  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.7  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   5.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   7.6  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    24   7.6  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   7.6  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   7.6  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    24   10.0 

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 283 PSYARRQLREISVKTALPAGGVSRKEPYFVAVRS 182
           PSY+RR L   S+ ++LP  G S   P   AVR+
Sbjct: 151 PSYSRRILLVGSLLSSLPIIGYSAYSPVKAAVRN 184


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 247  VKTALPAGGVSRKEPYFVAV-RSKTMASFSRPLT 149
            V TALP+     + P   +  RS T AS S PLT
Sbjct: 1077 VSTALPSSSAVSRPPIATSAGRSSTAASTSAPLT 1110


>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 242 LHADFTELTACVGGELDRHEGSAVHRRYFYITLLR 346
           LHA F+E     G  +     S VH    Y T+LR
Sbjct: 94  LHASFSEYLIFFGTPIGTEGHSGVHMADDYFTILR 128


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 284 ELDRHEGSAVHRRYFYITLLREPVARYLSEYRHVKRGA 397
           E+ RHE  + H  +  +TL   P A+YL  +++ K  A
Sbjct: 39  EIIRHEYPSKHFAFNVVTLEEPPKAKYL-HWKYSKEDA 75


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 17  VLHDDFRFDLNAHDVMVFLHIQKTGGTSFGRH 112
           VL+D     L+ HD  V      TG  SF RH
Sbjct: 50  VLYDTKEDVLSPHDASVLAVAHSTGHVSFYRH 81


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 150 QLHGLFRSRSITRCLPNDVPPVFCMC-KKTMTS*ALR 43
           ++   +R R I   +P ++P  FC C KK   S AL+
Sbjct: 506 EVKDFYRKRGI-EIMPKNLPRFFCYCLKKNKLSYALK 541


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 164 KRCHCFRPHSNEIWLFSRYS 223
           +R + F  HSN  WL S YS
Sbjct: 191 ERLYAFGFHSNNAWLISFYS 210


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -1

Query: 251 QREDRTSSRWSISKRAIFRCCEVENNGIFFAPVDSCTASLD 129
           ++  ++++ W   +RA+  CC+   +     P D    SLD
Sbjct: 105 RKSQKSAAEWEEIERALLSCCKRSKDPSILFPTD-VPCSLD 144


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 386 SRDDTPTNT*QLAPSAVLCRSTSGGRLSPRVGPIPLLRTPSAP 258
           S  +TPT     A S  + R  S   +S   G +PL RT S+P
Sbjct: 403 SNQETPT-----AASCAVSRIGSSYGMSNNFGSVPLGRTESSP 440


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 185 VENNGIFFAPVDSCTASLDLGP*PGVFRTMCHRF 84
           +EN  + F P+D+  + L     P +   +C R+
Sbjct: 106 LENLNLHFVPIDALESHLSEASFPSLRSVLCERY 139


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 164 KRCHCFRPHSNEIWLFSRYSTG 229
           K  H F  HS+E+W  S    G
Sbjct: 204 KEYHVFHDHSDEVWQISYSHNG 225


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 197 EIWLFSRYSTGWKCGLHADFTELTACVGGELDRHEGSAVHRRYFY 331
           E+ +F R     KCG ++ FT+L    G  L   + +   +R+F+
Sbjct: 598 ELSVFGRLRKISKCGPYSMFTQLMHQWGDRLSPSQVAEKVKRFFH 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,673,900
Number of Sequences: 5004
Number of extensions: 33557
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)