Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0951
(398 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 35 0.027
03_04_0092 + 17255548-17256046,17257838-17258262 28 3.1
10_08_0304 - 16640937-16642877 27 4.1
06_03_0632 - 22949942-22951351 27 5.5
08_02_0424 - 16957793-16958089,16958215-16958601,16958737-169597... 27 7.2
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 27 7.2
11_06_0313 + 22306497-22308938 26 9.5
06_01_0416 + 2965761-2965809,2965995-2966172,2966256-2966327,296... 26 9.5
01_06_0506 + 29887343-29887686,29889965-29890265,29890385-298906... 26 9.5
01_05_0175 - 18936752-18937621,18938855-18941641 26 9.5
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 34.7 bits (76), Expect = 0.027
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 35 RFDLNAHDVMVFLHIQKTGGTSFGRHLVMDLDLKRPCNCQRA---RKRCHCFR 184
R + NA V+VFL +K G T H +R CNC+++ +K C C++
Sbjct: 149 RSEANAEAVVVFL-TEKAGATEDAHHSSSSTPPRRGCNCKKSSCLKKYCDCYQ 200
>03_04_0092 + 17255548-17256046,17257838-17258262
Length = 307
Score = 27.9 bits (59), Expect = 3.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 344 SAVLCRSTSGGRLSPRVGPIPLLRTPSAP*NQREDRTSSRWSISKRAI 201
++V S + G SP P+PLLRT S P E+R R ++R +
Sbjct: 66 ASVCSVSAADGDPSP-AAPLPLLRTSSLPTETEEERWRRREMQNRRRL 112
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 324 YLRWTAEPSCRSNS---PPTHAVSSVKSA*RPHFQPVE 220
+ RW PS R + PP + S+ SA +P F+PVE
Sbjct: 53 HARWRELPSFRRGNDAAPPGASASASASAAQPFFRPVE 90
>06_03_0632 - 22949942-22951351
Length = 469
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 168 DAIVFDLTATKYGSFRDTPPAGSAVF 245
DA +F KY + DT PAGS V+
Sbjct: 257 DAALFKQNDAKYMEWLDTKPAGSVVY 282
>08_02_0424 -
16957793-16958089,16958215-16958601,16958737-16959735,
16959840-16959994,16960082-16960169,16960241-16960344,
16960424-16960646,16960839-16960923,16961006-16961397,
16962841-16963005
Length = 964
Score = 26.6 bits (56), Expect = 7.2
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 115 GYGPRSKEAVQLSTGAKKMPLFSTSQQRNMALFEILHRLEVRSSR*FHGADGVRRRGIGP 294
GY K+A +LS + L+ + ++ L + V+ + FHG G RG GP
Sbjct: 593 GYSDSGKDAGRLSAAWQ---LYKSQEE----LINVAKEFGVKLTM-FHGRGGTVGRGGGP 644
Query: 295 TR--GLSRPPEVL 327
T LS+PP+ +
Sbjct: 645 THLAILSQPPDTI 657
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 82 ENRWHIVRKTPGYGPRSKEAVQLSTGAKKMPLFSTSQQ 195
+N+ I++ G ++ + Q+S AKK+PL + Q
Sbjct: 621 DNKSQIIQDKKNNGATTENSSQISESAKKLPLTANKSQ 658
>11_06_0313 + 22306497-22308938
Length = 813
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 356 QLAPSAVLCRSTSGGRLSP-RVGPIPLLRTPSAP 258
Q PSA S R P RV +P+L TPSAP
Sbjct: 155 QTPPSATTDESGKKKRGRPKRVQDVPVLSTPSAP 188
>06_01_0416 +
2965761-2965809,2965995-2966172,2966256-2966327,
2966849-2967137,2967941-2968081,2969011-2969115,
2969354-2969501,2970023-2970075,2970189-2970266,
2970361-2970480,2970779-2970943,2971663-2971797,
2972063-2972182
Length = 550
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 44 LNAHDVMVFLHIQKTGGTSF 103
L+ D++ FLHI +TGG ++
Sbjct: 54 LSLRDLLFFLHIPRTGGRTY 73
>01_06_0506 +
29887343-29887686,29889965-29890265,29890385-29890677,
29890783-29891069,29891171-29891400
Length = 484
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 369 DKYLATGSLSSVM*KYLRWTAEPSCRSNSPPTHAVSSV 256
DKYL G+ S + L + P ++SPP V++V
Sbjct: 174 DKYLVFGAGSMQLINALVYALSPDGNADSPPASVVATV 211
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 166 KMPLFSTSQQRNMALFEILHRLEVRSSR*FHGADGVRRRGIGPTRGLSRPPEV 324
K P+F + AL + ++ S+ VRR I PTR PPEV
Sbjct: 401 KFPVFDACGRLKKALNRVARNPKLLCSKVGDDHAEVRRLVITPTRAYCLPPEV 453
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,897,464
Number of Sequences: 37544
Number of extensions: 254101
Number of successful extensions: 714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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