Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0951
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    33   0.086
SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)       29   1.8  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   1.8  
SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9)                    28   2.4  
SB_18887| Best HMM Match : DUF1098 (HMM E-Value=3.2)                   28   3.2  
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_35014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)           27   5.6  
SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)                  27   5.6  
SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)          27   7.4  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   27   7.4  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    27   7.4  
SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)                       26   9.8  

>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 33.1 bits (72), Expect = 0.086
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 62  MVFLHIQKTGGTSFGRHLVMDLDLKRPCNCQRARKRCHCFRPHSNEIWLFSR 217
           +VF H + TGGT+  R ++ DL    PC C +A    H  R    ++W F R
Sbjct: 797 LVFSHQRGTGGTTSSRKILYDLRNDFPCVCLKA-INTHT-REAITQLWRFCR 846


>SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)
          Length = 672

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 20  LHDDFRFDLNAHDVMVFLHIQKTGGTSFGRHLVMDLDLKRPCNCQRA 160
           L D +R + N  DV+  +H++   GT+   ++ M  DL+     Q A
Sbjct: 434 LQDRWRREANPEDVLQSIHVRSANGTTQPVYMTMTSDLQENVATQDA 480


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 368  TNT*QLAPSAVLCRSTSGGRLSPRVG-PIPLLRTPSAP*NQREDRTSSRWSISKRAIFRC 192
            TNT +L P     +S   GR   RV  P P + TP AP    +   +S   +  + +F+C
Sbjct: 1388 TNT-RLQPKITHRKSAKSGRTKSRVAKPTPHI-TPDAPQTYEKGENASTSKVRSQEMFQC 1445


>SB_11625| Best HMM Match : HemN_C (HMM E-Value=3.9)
          Length = 482

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 262 LREISVKTALPAGGVSRKEPYFVAVRSKTMASFSR 158
           LR+ISVK + P+    R   YF ++ SK  ++F+R
Sbjct: 272 LRDISVKYSTPSSTNGRYPTYFRSMLSKMPSAFAR 306


>SB_18887| Best HMM Match : DUF1098 (HMM E-Value=3.2)
          Length = 111

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 256 HGADGVRRRGIGPTRGLSRPPEVLLHNTA 342
           HG    +R  +GPTRG + PP V    T+
Sbjct: 16  HGQSSSKRTNLGPTRG-ANPPSVYQRTTS 43


>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1516

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 272 CVGGELDRHEGSAVHRRYFYITLLREPVARYL 367
           C G E+   +    ++  F +TLL+ P+ARY+
Sbjct: 104 CYGDEITNAKMLQAYQSSFTMTLLQRPIARYV 135


>SB_35014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 371 PTNT*QLAPSAVLCRSTSGGRLSPRVGPIPLLRTPSAP 258
           PT    +A +AV   S +G  L P   P+ +L TP +P
Sbjct: 160 PTVAPAVAAAAVAAASITGNPLGPIGSPMHVLTTPGSP 197


>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
          Length = 700

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 180 KQWHLFRAR*QLHGLFRSRSITRCLPNDVPPVFCMCKKTM 61
           K++H+F    + +G + S+S    + +   P  C CK ++
Sbjct: 278 KKFHVFEGLSEQNGFYTSKSFLPVVSSGSKPGMCACKSSL 317


>SB_45628| Best HMM Match : DUF1639 (HMM E-Value=0.19)
          Length = 662

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 135 RGRATVNGREKDA 173
           RGR  VNGREKDA
Sbjct: 131 RGRGAVNGREKDA 143



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +3

Query: 135 RGRATVNGREKDA 173
           RGR  VNGREKDA
Sbjct: 366 RGRGAVNGREKDA 378


>SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)
          Length = 463

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 329 YITLLREPVARYLSEYRHVKRG 394
           Y+T+LREPV+++ S + +++ G
Sbjct: 156 YVTILREPVSQFESTFDYMELG 177


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 89  GGTSFGRHLVMDLDLKRPCNCQRARKRCHC 178
           G  S  +    DLD K  CNC+R  K C C
Sbjct: 272 GQISSWKSFFKDLD-KLKCNCKRHSKTCGC 300


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 323 TSGGRLSPRVGPIPLLRTPSAP*NQREDRTSSRWSISKRAIFRCCEVENNG 171
           TS  R SPR+   P++R  +    +   RTSS   +S++++ +  E    G
Sbjct: 222 TSTFRSSPRLNKSPVIRKGNVAQKKEPVRTSSLREVSEKSVDKSSEHREPG 272


>SB_50802| Best HMM Match : PRC (HMM E-Value=8.3)
          Length = 426

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 194 NEIWLFSRYSTGWKCGLHADFTELTACVGGELDRHEGSAVHRRYFY 331
           +EI    RY+ GWK G+  +  +   C+   +   +G   +R YF+
Sbjct: 214 DEIIYLQRYAEGWKDGVWEEKIDDRDCIDNPVYYKDGGK-YRGYFW 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,190,815
Number of Sequences: 59808
Number of extensions: 280916
Number of successful extensions: 756
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)