Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0948
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1H4V4 Cluster: Secretion protein HlyD; n=3; Betaproteo...    34   3.7  
UniRef50_Q5KKT5 Cluster: Methylcrotonoyl-Coenzyme A carboxylase ...    34   3.7  

>UniRef50_Q1H4V4 Cluster: Secretion protein HlyD; n=3;
           Betaproteobacteria|Rep: Secretion protein HlyD -
           Methylobacillus flagellatus (strain KT / ATCC 51484 /
           DSM 6875)
          Length = 364

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 502 VQHVIINERALAWLPFPRE--NEMNPGLRITIDNSTIDEIASHAIQGRFNDIIIRNSKFV 675
           +  +I N+R  A LPFP    +++ PGL++ +   T +E A+  ++  F  +I  N++ +
Sbjct: 199 ILQIISNQRLRAHLPFPESLGSKLKPGLKVRLKTPTSEEEATGVLR-EFKPVIGSNNRAI 257

Query: 676 N 678
           +
Sbjct: 258 D 258


>UniRef50_Q5KKT5 Cluster: Methylcrotonoyl-Coenzyme A carboxylase 1,
           putative; n=3; cellular organisms|Rep:
           Methylcrotonoyl-Coenzyme A carboxylase 1, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 733

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = +1

Query: 316 DSFTRLICNCTSADSEVTLRPDGPYRVPSTITAIFINGCGRISFLSDT 459
           D +++LI +C ++ +E + +  GP ++ STI  IF+NG  ++   S +
Sbjct: 591 DLYSQLIQSCVTSSTEFSAQI-GPKKIQSTIIPIFVNGLEKLHIFSSS 637


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,870,045
Number of Sequences: 1657284
Number of extensions: 13672062
Number of successful extensions: 31777
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31775
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)